Essential amino acid residues and catalytic mechanism of trans-epoxysuccinate hydrolase for production of meso-tartaric acid
- PMID: 38740717
- DOI: 10.1007/s10529-024-03490-3
Essential amino acid residues and catalytic mechanism of trans-epoxysuccinate hydrolase for production of meso-tartaric acid
Abstract
Objectives: This study aimed to discuss the essential amino acid residues and catalytic mechanism of trans-epoxysuccinate hydrolase from Pseudomonas koreensis for the production of meso-tartaric acid.
Results: The optimum conditions of the enzyme were 45 °C and pH 9.0, respectively. It was strongly inhibited by Zn2+, Mn2+ and SDS. Michaelis-Menten enzyme kinetics analysis gave a Km value of 3.50 mM and a kcat of 99.75 s-1, with an exceptional EE value exceeding 99.9%. Multiple sequence alignment and homology modeling revealed that the enzyme belonged to MhpC superfamily and possessed a typical α/β hydrolase folding structure. Site-directed mutagenesis indicated H34, D104, R105, R108, D128, Y147, H149, W150, Y211, and H272 were important catalytic residues. The 18O-labeling study suggested the enzyme acted via two-step catalytic mechanism.
Conclusions: The structure and catalytic mechanism of trans-epoxysuccinate hydrolase were first reported. Ten residues were critical for its catalysis and a two-step mechanism by an Asp-His-Asp catalytic triad was proposed.
Keywords: Meso-tartaric acid; Pseudomonas koreensis; Trans-epoxysuccinate hydrolase; Catalytic mechanism.
© 2024. The Author(s), under exclusive licence to Springer Nature B.V.
References
-
- Allen RH, Jakoby WB (1969) Tartaric acid metabolism. IX. Synthesis with tartrate epoxidase. J Biol Chem 244(8):2078–2084. https://doi.org/10.1016/s0021-9258(18)94369-3 - DOI - PubMed
-
- Amrein BA, Bauer P, Duarte F, Carlsson ÅJ, Naworyta A, Mowbray SL, Widersten M, Kamerlin SCL (2015) Expanding the catalytic triad in epoxide hydrolases and related enzymes. ACS Catal 5(10):5702–5713. https://doi.org/10.1021/acscatal.5b01639 - DOI - PubMed - PMC
-
- Bahl CD, Madden DR (2012) Pseudomonas aeruginosa Cif defines a distinct class of α/β epoxide hydrolases utilizing a His/Tyr ring-opening pair. Protein Pept Lett 19(2):186–193. https://doi.org/10.2174/092986612799080392 - DOI - PubMed - PMC
-
- Bahl CD, Morisseau C, Bomberger JM, Stanton BA, Hammock BD, O’Toole GA, Madden DR (2010) Crystal structure of the cystic fibrosis transmembrane conductance regulator inhibitory factor Cif reveals novel active-site features of an epoxide hydrolase virulence factor. J Bacteriol 192(7):1785–1795. https://doi.org/10.1128/jb.01348-09 - DOI - PubMed - PMC
-
- Bahl CD, Hvorecny KL, Morisseau C, Gerber SA, Madden DR (2016) Visualizing the mechanism of epoxide hydrolysis by the bacterial virulence enzyme Cif. Biochemistry 55(5):788–797. https://doi.org/10.1021/acs.biochem.5b01229 - DOI - PubMed
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