Phylogenomic and comparative genomic analyses support a single evolutionary origin of flatfish asymmetry

Emanuell Duarte-Ribeiro^{1

2}, Ulises Rosas-Puchuri³, Matt Friedman⁴, Gavin C Woodruff³, Lily C Hughes⁵, Kent E Carpenter⁶, William T White⁷, John J Pogonoski⁷, Mark Westneat⁸, Juan Martin Diaz de Astarloa⁹, Jeffrey T Williams¹⁰, Mudjekeewis D Santos¹¹, Omar Domínguez-Domínguez¹², Guillermo Ortí¹³, Dahiana Arcila^{3

14}, Ricardo Betancur-R^{15

16}

Affiliations

¹ School of Biological Sciences, University of Oklahoma, Norman, OK, USA. emanuell.duarteribeiro@unibas.ch.
² Zoological Institute, Department of Environmental Sciences, University of Basel, Basel, Switzerland. emanuell.duarteribeiro@unibas.ch.
³ School of Biological Sciences, University of Oklahoma, Norman, OK, USA.
⁴ Museum of Paleontology, Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA.
⁵ North Carolina State University, North Carolina Museum of Natural Sciences, Raleigh, NC, USA.
⁶ Department of Biological Sciences, Old Dominion University, Norfolk, VA, USA.
⁷ CSIRO Australian National Fish Collection, National Research Collections Australia, Hobart, Tasmania, Australia.
⁸ Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA.
⁹ Instituto de Investigaciones Marinas y Costeras, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina.
¹⁰ Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
¹¹ National Fisheries Research and Development Institute, Department of Agriculture, Quezon City, Philippines.
¹² Facultad de Biología, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, México.
¹³ Department of Biological Sciences, The George Washington University, Washington, DC, USA.
¹⁴ Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA.
¹⁵ School of Biological Sciences, University of Oklahoma, Norman, OK, USA. rbetancur@ucsd.edu.
¹⁶ Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA. rbetancur@ucsd.edu.

PMID: 38802566
DOI: 10.1038/s41588-024-01784-w

Phylogenomic and comparative genomic analyses support a single evolutionary origin of flatfish asymmetry

Emanuell Duarte-Ribeiro et al. Nat Genet. 2024 Jun.

. 2024 Jun;56(6):1069-1072.

doi: 10.1038/s41588-024-01784-w. Epub 2024 May 27.

Authors

Affiliations

¹ School of Biological Sciences, University of Oklahoma, Norman, OK, USA. emanuell.duarteribeiro@unibas.ch.
² Zoological Institute, Department of Environmental Sciences, University of Basel, Basel, Switzerland. emanuell.duarteribeiro@unibas.ch.
³ School of Biological Sciences, University of Oklahoma, Norman, OK, USA.
⁴ Museum of Paleontology, Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA.
⁵ North Carolina State University, North Carolina Museum of Natural Sciences, Raleigh, NC, USA.
⁶ Department of Biological Sciences, Old Dominion University, Norfolk, VA, USA.
⁷ CSIRO Australian National Fish Collection, National Research Collections Australia, Hobart, Tasmania, Australia.
⁸ Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, USA.
⁹ Instituto de Investigaciones Marinas y Costeras, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina.
¹⁰ Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
¹¹ National Fisheries Research and Development Institute, Department of Agriculture, Quezon City, Philippines.
¹² Facultad de Biología, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, México.
¹³ Department of Biological Sciences, The George Washington University, Washington, DC, USA.
¹⁴ Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA.
¹⁵ School of Biological Sciences, University of Oklahoma, Norman, OK, USA. rbetancur@ucsd.edu.
¹⁶ Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA. rbetancur@ucsd.edu.

PMID: 38802566
DOI: 10.1038/s41588-024-01784-w

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References

1. Lü, Z. et al. Large-scale sequencing of flatfish genomes provides insights into the polyphyletic origin of their specialized body plan. Nat. Genet. 53, 742–751 (2021). - DOI - PubMed - PMC
1. Friedman, M. The evolutionary origin of flatfish asymmetry. Nature 454, 209–212 (2008). - DOI - PubMed
1. Campinho, M. A. et al. A thyroid hormone regulated asymmetric responsive centre is correlated with eye migration during flatfish metamorphosis. Sci Rep. 8, 12267 (2018). - DOI - PubMed - PMC
1. Betancur-R, R. et al. Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes). Syst. Biol. 62, 763–785 (2013). - DOI - PubMed
1. Jarvis, E. D. et al. A phylogeny of modern birds. Science 346, 1126–1138 (2014).

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Phylogenomic and comparative genomic analyses support a single evolutionary origin of flatfish asymmetry

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Phylogenomic and comparative genomic analyses support a single evolutionary origin of flatfish asymmetry

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