Key considerations for investigating and interpreting autophagy in skeletal muscle

Abstract

Skeletal muscle plays a crucial role in generating force to facilitate movement. Skeletal muscle is a heterogenous tissue composed of diverse fibers with distinct contractile and metabolic profiles. The intricate classification of skeletal muscle fibers exists on a continuum ranging from type I (slow-twitch, oxidative) to type II (fast-twitch, glycolytic). The heterogenous distribution and characteristics of fibers within and between skeletal muscles profoundly influences cellular signaling; however, this has not been broadly discussed as it relates to macroautophagy/autophagy. The growing interest in skeletal muscle autophagy research underscores the necessity of comprehending the interplay between autophagic responses among skeletal muscles and fibers with different contractile properties, metabolic profiles, and other related signaling processes. We recommend approaching the interpretation of autophagy findings with careful consideration for two key reasons: 1) the distinct behaviors and responses of different skeletal muscles or fibers to various perturbations, and 2) the potential impact of alterations in skeletal muscle fiber type or metabolic profile on observed autophagic outcomes. This review provides an overview of the autophagic profile and response in skeletal muscles/fibers of different types and metabolic profiles. Further, this review discusses autophagic findings in various conditions and diseases that may differentially affect skeletal muscle. Finally, we provide key points of consideration to better enable researchers to fine-tune the design and interpretation of skeletal muscle autophagy experiments.Abbreviation: AKT1: AKT serine/threonine kinase 1; AMPK: AMP-activated protein kinase; ATG: autophagy related; ATG4: autophagy related 4 cysteine peptidase; ATG5: autophagy related 5; ATG7: autophagy related 7; ATG12: autophagy related 12; BECN1: beclin 1; BNIP3: BCL2 interacting protein 3; CKD: chronic kidney disease; COPD: chronic obstructive pulmonary disease; CS: citrate synthase; DIA: diaphragm; EDL: extensor digitorum longus; FOXO3/FOXO3A: forkhead box O3; GAS; gastrocnemius; GP: gastrocnemius-plantaris complex; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MAPK: mitogen-activated protein kinase; MYH: myosin heavy chain; PINK1: PTEN induced kinase 1; PLANT: plantaris; PRKN: parkin RBR E3 ubiquitin protein ligase; QUAD: quadriceps; RA: rectus abdominis; RG: red gastrocnemius; RQ: red quadriceps; SOL: soleus; SQSTM1: sequestosome 1; TA: tibialis anterior; WG: white gastrocnemius; WQ: white quadriceps; WVL: white vastus lateralis; VL: vastus lateralis; ULK1: unc-51 like autophagy activating kinase 1.

Keywords: Contraction; fiber type; metabolic; mitochondria; mitophagy; skeletal muscle.

Figure 1.

Slow/oxidative muscles have slower contraction speeds, greater mitochondrial content, and higher oxidative potential compared to fast/glycolytic muscles along with greater expression of many autophagy-related factors. In contrast, fast/glycolytic muscles exhibit greater autophagic flux and sensitivity to metabolic stressors (e.g., fasting and exercise shown).

Figure 2.

Shifts in skeletal muscle phenotype and autophagy. (A) Illustration of skeletal muscle cross-section consisting of mixed fiber composition. Changes in MYH composition within the skeletal muscle, favoring a shift toward a fast/glycolytic or slow/oxidative phenotype, may be linked to alterations in autophagy and mitophagy. (B) Illustration of a skeletal muscle cross-section with associated changes in mitochondrial content, mitochondrial function, and metabolic activity. These changes, in turn, may influence autophagy and mitophagy signaling. Additionally, variations in mitochondrial morphology and network dynamics, such as fusion or fission (conceptually shown), could impact parameters like mitochondrial function, thereby influencing autophagy and mitophagy processes within the skeletal muscle.