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. 2024 Sep 10;13(9):e0032624.
doi: 10.1128/mra.00326-24. Epub 2024 Jul 31.

Complete genome sequence of an Indian outbreak strain of chikungunya virus

Eshna Laha #  1   2 , Deepak Jena #  1 , Viplov K Biswas  1   3 , Sharad Singh  1   3 , Sunil K Raghav  1 , Asit K Pattnaik  4   5 , Soma Chattopadhyay  1
Affiliations

Complete genome sequence of an Indian outbreak strain of chikungunya virus

Eshna Laha et al. Microbiol Resour Announc. .

Abstract

Here, we report the complete genome sequence of an Indian strain of chikungunya virus isolated from an infected patient from Hyderabad, Andhra Pradesh, India, during a massive outbreak in 2005-2006. The genome length spans 11,811 nucleotides and has a poly(A) tail of 29 residues at the 3' end.

Keywords: CHIKV; chikungunya virus; whole genome sequence.

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Conflict of interest statement

The authors declare no conflict of interest.

Figures

Fig 1
Fig 1
Phylogeny of chikungunya virus strains. Evolutionary history was inferred using the neighbor-joining method with default parameters. The optimal tree is shown and drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the maximum composite likelihood method and are in units of the number of base substitutions per site. MUSCLE tool was used to build the alignment and cleaned using the “pairwise deletion” option. Neighbor-joining method was the statistical method of choice with 1,000 bootstrap replicates. MEGA11 (v.11.0.13) was used to build and analyze the tree.
See this image and copyright information in PMC

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