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. 2024 Sep:39:100488.
doi: 10.1016/j.cotox.2024.100488. Epub 2024 Jun 22.

Application of Single Cell Methods in Immunometabolism and Immunotoxicology

Affiliations

Application of Single Cell Methods in Immunometabolism and Immunotoxicology

Peer W F Karmaus. Curr Opin Toxicol. 2024 Sep.

Abstract

Recent developments of novel single-cell analysis techniques have rapidly advanced the fields of immunotoxicology and immunometabolism. Single-cell analyses enable the characterization of immune cells, unraveling heterogeneity, and population dynamics in response to cellular perturbations, including toxicant insults and changes in cellular metabolism. This review provides an overview of current technologies and recent discoveries, illustrating an emerging role of single-cell analyses in the field of immunotoxicology and immunometabolism. Various single-cell techniques, including flow cytometry, mass cytometry, multiplexed imaging, and sequencing, together with their applications to studying immunotoxicology and immunometabolism are discussed. This review emphasizes the potential for single-cell analyses to revolutionize our understanding of immune cell heterogeneity, uncover novel cellular therapeutic targets, and pave the way for novel mechanistic insights.

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Conflict of interest statement

Disclosures The author declares no conflicts of interest.

Figures

Figure 1.
Figure 1.. Molecular Targets of Single Cell Methods
A synopsis of the cellular compartments and corresponding molecular targets of single cell analysis methods is provided. For DNA, RNA, protein, and metabolites, the cellular locations are highlighted in bold. The names of single cell analysis methods associated with the molecular targets include those with dot boxes.

References

    1. Montoro DT, Haber AL, Biton M, Vinarsky V, Lin B, Birket SE, Yuan F, Chen S, Leung HM, Villoria J, et al. : A revised airway epithelial hierarchy includes CFTR-expressing ionocytes. Nature 2018, 560:319–324. - PMC - PubMed
    1. Plasschaert LW, Zilionis R, Choo-Wing R, Savova V, Knehr J, Roma G, Klein AM, Jaffe AB: A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte. Nature 2018, 560:377–381. - PMC - PubMed
    1. Karmaus PWF, Chen X, Lim SA, Herrada AA, Nguyen TM, Xu B, Dhungana Y, Rankin S, Chen W, Rosencrance C, et al. : Metabolic heterogeneity underlies reciprocal fates of T(H)17 cell stemness and plasticity. Nature 2019, 565:101–105. - PMC - PubMed
    1. Tirosh I, Izar B, Prakadan SM, Wadsworth MH 2nd, Treacy D, Trombetta JJ, Rotem A, Rodman C, Lian C, Murphy G, et al. : Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq. Science 2016, 352:189–196. - PMC - PubMed
    1. Kirschenbaum D, Xie K, Ingelfinger F, Katzenelenbogen Y, Abadie K, Look T, Sheban F, Phan TS, Li B, Zwicky P, et al. : Time-resolved single-cell transcriptomics defines immune trajectories in glioblastoma. Cell 2024, 187:149–165 e123. - PubMed

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