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. 2024 Dec;92(6):2707-2722.
doi: 10.1002/mrm.30239. Epub 2024 Aug 11.

DeepEMC-T2 mapping: Deep learning-enabled T2 mapping based on echo modulation curve modeling

Haoyang Pei  1   2   3 , Timothy M Shepherd  1   2 , Yao Wang  3 , Fang Liu  4   5 , Daniel K Sodickson  1   2 , Noam Ben-Eliezer  1   2   6   7 , Li Feng  1   2
Affiliations

DeepEMC-T2 mapping: Deep learning-enabled T2 mapping based on echo modulation curve modeling

Haoyang Pei et al. Magn Reson Med. 2024 Dec.

Abstract

Purpose: Echo modulation curve (EMC) modeling enables accurate quantification of T2 relaxation times in multi-echo spin-echo (MESE) imaging. The standard EMC-T2 mapping framework, however, requires sufficient echoes and cumbersome pixel-wise dictionary-matching steps. This work proposes a deep learning version of EMC-T2 mapping, called DeepEMC-T2 mapping, to efficiently estimate accurate T2 maps from fewer echoes.

Methods: DeepEMC-T2 mapping was developed using a modified U-Net to estimate both T2 and proton density (PD) maps directly from MESE images. The network implements several new features to improve the accuracy of T2/PD estimation. A total of 67 MESE datasets acquired in axial orientation were used for network training and evaluation. An additional 57 datasets acquired in coronal orientation with different scan parameters were used to evaluate the generalizability of the framework. The performance of DeepEMC-T2 mapping was evaluated in seven experiments.

Results: Compared to the reference, DeepEMC-T2 mapping achieved T2 estimation errors from 1% to 11% and PD estimation errors from 0.4% to 1.5% with ten/seven/five/three echoes, which are more accurate than standard EMC-T2 mapping. By incorporating datasets acquired with different scan parameters and orientations for joint training, DeepEMC-T2 exhibits robust generalizability across varying imaging protocols. Increasing the echo spacing and including longer echoes improve the accuracy of parameter estimation. The new features proposed in DeepEMC-T2 mapping all enabled more accurate T2 estimation.

Conclusions: DeepEMC-T2 mapping enables simplified, efficient, and accurate T2 quantification directly from MESE images without dictionary matching. Accurate T2 estimation from fewer echoes allows for increased volumetric coverage and/or higher slice resolution without prolonging total scan times.

Keywords: T2 mapping; deep learning; echo modulation curve; multi‐echo spin‐echo; quantitative MRI.

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