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. 2024 Mar 11:9:143.
doi: 10.12688/wellcomeopenres.21090.1. eCollection 2024.

The genome sequence of the Crescent Groundling, Teleiodes luculella (Hübner, 1813)

Douglas Boyes  1 , Clare Boyes  2 ; University of Oxford and Wytham Woods Genome Acquisition Lab; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team; Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics team; Tree of Life Core Informatics collective; Darwin Tree of Life Consortium
Affiliations

The genome sequence of the Crescent Groundling, Teleiodes luculella (Hübner, 1813)

Douglas Boyes et al. Wellcome Open Res. .

Abstract

We present a genome assembly from an individual male Teleiodes luculella (the Crescent Groundling; Arthropoda; Insecta; Lepidoptera; Gelechiidae). The genome sequence is 454.5 megabases in span. Most of the assembly is scaffolded into 30 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.32 kilobases in length. Gene annotation of this assembly on Ensembl identified 19,943 protein coding genes.

Keywords: Lepidoptera; Teleiodes luculella; chromosomal; crescent groundling; genome sequence.

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Conflict of interest statement

No competing interests were disclosed.

Figures

Figure 1.
Figure 1.. Photograph of the Teleiodes luculella (ilTelLucu1) specimen used for genome sequencing.
Figure 2.
Figure 2.. Genome assembly of Teleiodes luculella, ilTelLucu1.1: metrics.
The BlobToolKit snail plot shows N50 metrics and BUSCO gene completeness. The main plot is divided into 1,000 size-ordered bins around the circumference with each bin representing 0.1% of the 454,474,787 bp assembly. The distribution of scaffold lengths is shown in dark grey with the plot radius scaled to the longest scaffold present in the assembly (30,471,558 bp, shown in red). Orange and pale-orange arcs show the N50 and N90 scaffold lengths (15,281,747 and 8,929,433 bp), respectively. The pale grey spiral shows the cumulative scaffold count on a log scale with white scale lines showing successive orders of magnitude. The blue and pale-blue area around the outside of the plot shows the distribution of GC, AT and N percentages in the same bins as the inner plot. A summary of complete, fragmented, duplicated and missing BUSCO genes in the lepidoptera_odb10 set is shown in the top right. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAOKYR01/dataset/CAOKYR01/snail.
Figure 3.
Figure 3.. Genome assembly of Teleiodes luculella, ilTelLucu1.1: BlobToolKit GC-coverage plot.
Sequences are coloured by phylum. Circles are sized in proportion to sequence length. Histograms show the distribution of sequence length sum along each axis. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAOKYR01/dataset/CAOKYR01/blob.
Figure 4.
Figure 4.. Genome assembly of Teleiodes luculella, ilTelLucu1.1: BlobToolKit cumulative sequence plot.
The grey line shows cumulative length for all sequences. Coloured lines show cumulative lengths of sequences assigned to each phylum using the buscogenes taxrule. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAOKYR01/dataset/CAOKYR01/cumulative.
Figure 5.
Figure 5.. Genome assembly of Teleiodes luculella, ilTelLucu1.1: Hi-C contact map of the ilTelLucu1.1 assembly, visualised using HiGlass.
Chromosomes are shown in order of size from left to right and top to bottom. An interactive version of this figure may be viewed at https://genome-note-higlass.tol.sanger.ac.uk/l/?d=ZLnB8ozxSOygY9xC6AzPNg.
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