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. 2024 Jul 31:56:110777.
doi: 10.1016/j.dib.2024.110777. eCollection 2024 Oct.

Shotgun metagenomic dataset of root endophytic microbiome of citrus (Citrus nobilis L.)

Dinh Minh Tran  1 , Dinh Sy Nguyen  2 , Thi Huyen Nguyen  1 , Thi Phuong Hanh Tran  2 , Anh Dzung Nguyen  1
Affiliations

Shotgun metagenomic dataset of root endophytic microbiome of citrus (Citrus nobilis L.)

Dinh Minh Tran et al. Data Brief. .

Abstract

Citrus (Citrus nobilis L.) is one of the main fruit crops in Dak Lak Province of Vietnam; however, a dataset on the endophytic microbiome of this plant has yet to be discovered. This article presented the endophytic microbial dataset from roots of healthy Citrus nobilis L. collected in Dak Lak for the first time. We found that 4 kingdoms, 30 phyla, 58 classes, 125 orders, 242 families, 722 genera, and 1637 species of endophytic microorganisms were identified from the sample. Actinomycetota was shown to be the main phylum (64.36 %) and biosynthesis to be the most abundant function (55.64 %) of the endophytic microbial community. Data provided insights into the composition and functional diversity of the Citrus nobilis L. endophytic microbiome, especially novel microbial resources. They could be used for the next works towards applying the endophytic microbiome for sustainable citrus production.

Keywords: Actinomycetota; Biosynthesis; Citrus endophytic microbiome; Shotgun metagenomics.

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Figures

Fig 1
Fig. 1
The endophytic microbiome of Citrus nobilis L.
Fig 2
Fig. 2
Functional profiles of the endophytic microbiome of Citrus nobilis L.
See this image and copyright information in PMC

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