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Comment
. 2024 Sep;10(9):1295-1296.
doi: 10.1038/s41477-024-01772-2.

Understanding cell-type-specific regulation during seed germination

No authors listed
Comment

Understanding cell-type-specific regulation during seed germination

No authors listed. Nat Plants. 2024 Sep.
No abstract available

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Comment on

  • Establishment of single-cell transcriptional states during seed germination.
    Liew LC, You Y, Auroux L, Oliva M, Peirats-Llobet M, Ng S, Tamiru-Oli M, Berkowitz O, Hong UVT, Haslem A, Stuart T, Ritchie ME, Bassel GW, Lister R, Whelan J, Gouil Q, Lewsey MG. Liew LC, et al. Nat Plants. 2024 Sep;10(9):1418-1434. doi: 10.1038/s41477-024-01771-3. Epub 2024 Sep 10. Nat Plants. 2024. PMID: 39256563 Free PMC article.

References

    1. Bassel, G. W. et al. Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions. Proc. Natl Acad. Sci. USA 108, 9709–9714 (2011). This paper presents a network model of global transcriptional interactions (SeedNet) of dormancy and germination in seeds. - PubMed - PMC - DOI
    1. Topham, A. T. et al. Temperature variability is integrated by a spatially embedded decision-making center to break dormancy in Arabidopsis seeds. Proc. Natl Acad. Sci. USA 114, 6629–6634 (2017). This paper reports the discovery of a decision-making centre within dormant seeds. - PubMed - PMC - DOI
    1. Lin, C., Ding, J. & Bar-Joseph, Z. Inferring TF activation order in time series scRNA-seq studies. PLoS Comput. Biol. 16, e1007644 (2022). This paper presents the development of the continuous-state hidden Markov models transcription factor (CSHMM-TF) method and its use in predicting transcription factor activation time in scRNA-seq data.
    1. Narsai, R. et al. Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination. Genome Biol. 18, 1–18 (2017). This paper presents transcriptomic and epigenomic data during A. thaliana germination. - DOI
    1. Liew, L. C. et al. Temporal tissue‐specific regulation of transcriptomes during barley (Hordeum vulgare) seed germination. Plant J. 101, 700–715 (2020). This paper reports tissue-specific transcriptomes during barley seed germination. - PubMed - DOI

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