Automated customization of large-scale spiking network models to neuronal population activity
- PMID: 39285002
- PMCID: PMC12047676
- DOI: 10.1038/s43588-024-00688-3
Automated customization of large-scale spiking network models to neuronal population activity
Abstract
Understanding brain function is facilitated by constructing computational models that accurately reproduce aspects of brain activity. Networks of spiking neurons capture the underlying biophysics of neuronal circuits, yet their activity's dependence on model parameters is notoriously complex. As a result, heuristic methods have been used to configure spiking network models, which can lead to an inability to discover activity regimes complex enough to match large-scale neuronal recordings. Here we propose an automatic procedure, Spiking Network Optimization using Population Statistics (SNOPS), to customize spiking network models that reproduce the population-wide covariability of large-scale neuronal recordings. We first confirmed that SNOPS accurately recovers simulated neural activity statistics. Then, we applied SNOPS to recordings in macaque visual and prefrontal cortices and discovered previously unknown limitations of spiking network models. Taken together, SNOPS can guide the development of network models, thereby enabling deeper insight into how networks of neurons give rise to brain function.
© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.
Conflict of interest statement
Competing interests
The authors declare no competing interests.
Update of
-
Automated customization of large-scale spiking network models to neuronal population activity.bioRxiv [Preprint]. 2023 Sep 22:2023.09.21.558920. doi: 10.1101/2023.09.21.558920. bioRxiv. 2023. Update in: Nat Comput Sci. 2024 Sep;4(9):690-705. doi: 10.1038/s43588-024-00688-3. PMID: 37790533 Free PMC article. Updated. Preprint.
Similar articles
-
Automated customization of large-scale spiking network models to neuronal population activity.bioRxiv [Preprint]. 2023 Sep 22:2023.09.21.558920. doi: 10.1101/2023.09.21.558920. bioRxiv. 2023. Update in: Nat Comput Sci. 2024 Sep;4(9):690-705. doi: 10.1038/s43588-024-00688-3. PMID: 37790533 Free PMC article. Updated. Preprint.
-
Single-Cell Membrane Potential Fluctuations Evince Network Scale-Freeness and Quasicriticality.J Neurosci. 2019 Jun 12;39(24):4738-4759. doi: 10.1523/JNEUROSCI.3163-18.2019. Epub 2019 Apr 5. J Neurosci. 2019. PMID: 30952810 Free PMC article.
-
The spatial structure of correlated neuronal variability.Nat Neurosci. 2017 Jan;20(1):107-114. doi: 10.1038/nn.4433. Epub 2016 Oct 31. Nat Neurosci. 2017. PMID: 27798630 Free PMC article.
-
From artificial neural networks to spiking neuron populations and back again.Neural Netw. 2001 Jul-Sep;14(6-7):941-53. doi: 10.1016/s0893-6080(01)00068-5. Neural Netw. 2001. PMID: 11665784 Review.
-
Introduction to spiking neural networks: Information processing, learning and applications.Acta Neurobiol Exp (Wars). 2011;71(4):409-33. doi: 10.55782/ane-2011-1862. Acta Neurobiol Exp (Wars). 2011. PMID: 22237491 Review.
References
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources
Research Materials