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. 2024 Jul 10:9:369.
doi: 10.12688/wellcomeopenres.22610.1. eCollection 2024.

The genome sequence of Blair's Shoulder-knot, Lithophane leautieri (Boisduval, 1829)

David C Lees  1 ; Natural History Museum Genome Acquisition Lab; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team; Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics team; Tree of Life Core Informatics collective; Darwin Tree of Life Consortium
Affiliations

The genome sequence of Blair's Shoulder-knot, Lithophane leautieri (Boisduval, 1829)

David C Lees et al. Wellcome Open Res. .

Abstract

We present a genome assembly from an individual male Lithophane leautieri (Blair's Shoulder-knot; Arthropoda; Insecta; Lepidoptera; Noctuidae). The genome sequence is 521.7 megabases in span. Most of the assembly is scaffolded into 31 chromosomal pseudomolecules, including the Z sex chromosome. The mitochondrial genome has also been assembled and is 15.4 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,254 protein coding genes.

Keywords: Blair’s Shoulder-knot; Lepidoptera; Lithophane leautieri; chromosomal; genome sequence.

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Conflict of interest statement

No competing interests were disclosed.

Figures

Figure 1.
Figure 1.. Photograph of the Lithophane leautieri (ilLitLeau1) specimen used for genome sequencing.
Figure 2.
Figure 2.. Genome assembly of Lithophane leautieri, ilLitLeau1.1: metrics.
The BlobToolKit snail plot shows N50 metrics and BUSCO gene completeness. The main plot is divided into 1,000 size-ordered bins around the circumference with each bin representing 0.1% of the 521,693,918 bp assembly. The distribution of scaffold lengths is shown in dark grey with the plot radius scaled to the longest scaffold present in the assembly (22,560,491 bp, shown in red). Orange and pale-orange arcs show the N50 and N90 scaffold lengths (17,894,250 and 13,159,172 bp), respectively. The pale grey spiral shows the cumulative scaffold count on a log scale with white scale lines showing successive orders of magnitude. The blue and pale-blue area around the outside of the plot shows the distribution of GC, AT and N percentages in the same bins as the inner plot. A summary of complete, fragmented, duplicated and missing BUSCO genes in the lepidoptera_odb10 set is shown in the top right. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CASCJV01/dataset/CASCJV01/snail.
Figure 3.
Figure 3.. Genome assembly of Lithophane leautieri, ilLitLeau1.1: BlobToolKit GC-coverage plot.
Scaffolds are coloured by phylum. Circles are sized in proportion to scaffold length. Histograms show the distribution of scaffold length sum along each axis. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CASCJV01/dataset/CASCJV01/blob.
Figure 4.
Figure 4.. Genome assembly of Lithophane leautieri, ilLitLeau1.1: BlobToolKit cumulative sequence plot.
The grey line shows cumulative length for all scaffolds. Coloured lines show cumulative lengths of scaffolds assigned to each phylum using the buscogenes taxrule. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CASCJV01/dataset/CASCJV01/cumulative.
Figure 5.
Figure 5.. Genome assembly of Lithophane leautieri, ilLitLeau1.1: Hi-C contact map of the ilLitLeau1.1 assembly, visualised using HiGlass.
Chromosomes are shown in order of size from left to right and top to bottom. An interactive version of this figure may be viewed at https://genome-note-higlass.tol.sanger.ac.uk/l/?d=YkBcWlMPSG-pwbANlgoFfw.
See this image and copyright information in PMC

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