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. 2024 Jun 24:9:339.
doi: 10.12688/wellcomeopenres.21143.1. eCollection 2024.

A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project

Alex D Twyford  1   2 , Jordan Beasley  3 , Ian Barnes  3 , Heather Allen  3 , Freja Azzopardi  4 , David Bell  2 , Mark L Blaxter  5 , Gavin Broad  3 , Lucia Campos-Dominguez  1   2   6 , Darren Choonea  3 , Liam Crowley  7 , Piotr Cuber  3 , Michael Cunliffe  4 , Alexandra Dombrowski  8 , Brian Douglas  8 , Laura L Forrest  2 , Ester Gaya  8 , Clementine Greeves  3 , Claire Griffin  3 , Joanna Harley  4 , Michelle L Hart  2 , Peter W H Holland  7 , Peter M Hollingsworth  2 , Inez Januszczak  3 , Amanda Jones  2 , Paul Kersey  8 , Estelle Kilias  7 , Mara K N Lawniczak  5 , Owen T Lewis  7 , Sahr Mian  8 , Alice Minotto  9 , Raju Misra  3 , Peter O Mulhair  7 , Lyndall Pereira da Conceicoa  5 , Ben W Price  3 , Silvia Salatino  3 , Felix Shaw  9 , Olga Sivell  3 , Laura Sivess  3 , Rebekka Uhl  4 , Kieran Woof  8 ; Darwin Tree of Life Consortium
Affiliations

A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project

Alex D Twyford et al. Wellcome Open Res. .

Abstract

Biodiversity genomics research requires reliable organismal identification, which can be difficult based on morphology alone. DNA-based identification using DNA barcoding can provide confirmation of species identity and resolve taxonomic issues but is rarely used in studies generating reference genomes. Here, we describe the development and implementation of DNA barcoding for the Darwin Tree of Life Project (DToL), which aims to sequence and assemble high quality reference genomes for all eukaryotic species in Britain and Ireland. We present a standardised framework for DNA barcode sequencing and data interpretation that is then adapted for diverse organismal groups. DNA barcoding data from over 12,000 DToL specimens has identified up to 20% of samples requiring additional verification, with 2% of seed plants and 3.5% of animal specimens subsequently having their names changed. We also make recommendations for future developments using new sequencing approaches and streamlined bioinformatic approaches.

Keywords: Britain and Ireland; DNA barcoding; biodiversity; species identification; taxonomy.

Plain language summary

Identifying species based solely on their morphology can be difficult. DNA-based identification using DNA barcoding can aid species identification, but can be challenging to implement in biodiversity projects sampling diverse organismal groups. Here, we describe the development and implementation of DNA barcoding for the Darwin Tree of Life Project (DToL), which aims to sequence and assemble high quality reference genomes for all eukaryotic species in Britain and Ireland. We discuss how a standardised approach has been adapted by each partner to suit different organismal groups, show the efficacy of this approach for confirming species identities and resolving taxonomic issues, and make recommendations for future developments.

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Conflict of interest statement

No competing interests were disclosed.

Figures

Figure 1.
Figure 1.. General DNA barcoding workflow for DToL.
Specific lab protocols, barcoding regions and query parameters vary between taxa and barcoding hubs.
See this image and copyright information in PMC

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