Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2025;32(28):5924-5938.
doi: 10.2174/0109298673325827240926081845.

Molecular Docking in Drug Discovery: Techniques, Applications, and Advancements

Affiliations
Review

Molecular Docking in Drug Discovery: Techniques, Applications, and Advancements

Cinthia Aguiar et al. Curr Med Chem. 2025.

Abstract

The primary objective of this study is to conduct a comprehensive review of the significance of molecular docking in the field of drug discovery. This includes an examination of the various approaches and methods used in molecular docking, as well as an exploration of the techniques used for interpreting and validating docking results. To gather relevant data, a systematic search was conducted using Web of Science, PubMed, and Google Scholar. The search focused on articles related to molecular docking methodologies and their applications in drug discovery. Additionally, alternative techniques that can be used for more precise simulations of ligand-protein interactions were also considered. Molecular docking has proven to be an incredibly rich and valuable process in the field of drug discovery. Its flexibility allows for the incorporation of advanced computational techniques, thereby enhancing the reliability and efficiency of drug discovery processes. The results of the study highlights the significant strides made in the field of molecular docking, demonstrating its potential to revolutionize drug discovery. Molecular docking continues to evolve, with new advancements being made regularly. Despite the challenges faced, these advancements have significantly contributed to the enhancement of molecular docking, solidifying its position as a crucial tool in the field of drug discovery.

Keywords: HTS.; Molecular docking; ligand-protein; machine learning; scoring functions; validation.

PubMed Disclaimer

References

    1. Ferreira L.; Dos Santos R.; Oliva G.; Andricopulo A.; Molecular docking and structure-based drug design strategies. Molecules 2015,20(7),13384-13421 - DOI - PubMed
    1. Pinzi L.; Rastelli G.; Molecular docking: Shifting paradigms in drug discovery. Int J Mol Sci 2019,20(18),4331 - DOI - PubMed
    1. McNutt A.T.; Francoeur P.; Aggarwal R.; Masuda T.; Meli R.; Ragoza M.; Sunseri J.; Koes D.R.; GNINA 1.0: Molecular docking with deep learning. J Cheminform 2021,13(1),43 - DOI - PubMed
    1. Bender B.J.; Gahbauer S.; Luttens A.; Lyu J.; Webb C.M.; Stein R.M.; Fink E.A.; Balius T.E.; Carlsson J.; Irwin J.J.; Shoichet B.K.; A practical guide to large-scale docking. Nat Protoc 2021,16(10),4799-4832 - DOI - PubMed
    1. Sahu D.; Rathor L.S.; Dwivedi S.D.; Shah K.; Chauhan N.S.; Singh M.R.; Singh D.; A review on molecular docking as an interpretative tool for molecular targets in disease management. Assay Drug Dev Technol 2024,22(1),40-50 - DOI - PubMed

LinkOut - more resources