World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens

Mihaela C Ion^#¹, Caitlin C Bloomer^#², Tudor I Bărăscu³, Francisco J Oficialdegui⁴, Nathaniel F Shoobs⁵, Bronwyn W Williams⁶, Kevin Scheers⁷, Miguel Clavero⁸, Frédéric Grandjean⁹, Marc Collas¹⁰, Thomas Baudry⁹, Zachary Loughman¹¹, Jeremy J Wright¹², Timo J Ruokonen¹³, Christoph Chucholl¹⁴, Simone Guareschi¹⁵, Bram Koese¹⁶, Zsombor M Banyai^{17

18}, James Hodson¹⁹, Margo Hurt²⁰, Katrin Kaldre²⁰, Boris Lipták^{4

21}, James W Fetzner²², Tommaso Cancellario²³, András Weiperth²⁴, Jạnis Birzaks²⁵, Teodora Trichkova²⁶, Milcho Todorov²⁶, Maksims Balalaikins²⁵, Bogna Griffin²⁷, Olga N Petko²⁸, Ada Acevedo-Alonso²⁹, Guillermo D'Elía³⁰, Karolina Śliwińska³¹, Anatoly Alekhnovich³¹, Henry Choong³², Josie South^{33

34}, Nick Whiterod^{35

36}, Katarina Zorić³⁷, Peter Haase^{38

39}, Ismael Soto⁴, Daniel J Brady⁴⁰, Phillip J Haubrock^{4

39

41}, Pedro J Torres⁴², Denis Şadrin²⁸, Pavel Vlach⁴³, Cüneyt Kaya⁴⁴, Sang Woo Jung⁴⁵, Jin-Young Kim⁴⁶, Xavier H C Vermeersch⁴⁷, Maciej Bonk⁴⁸, Radu Guiaşu⁴⁹, Muzaffer M Harlioğlu⁵⁰, Jane Devlin⁵¹, Irmak Kurtul^{52

53}, Dagmara Błońska⁵⁴, Pieter Boets⁵⁵, Hossein Masigol²⁸, Paul R Cabe⁵⁶, Japo Jussila⁵⁷, Trude Vrålstad⁵⁸, David V Beresford⁵⁹, Scott M Reid⁵¹, Jiří Patoka⁶⁰, David A Strand⁵⁸, Ali S Tarkan^{54

61}, Frédérique Steen⁷, Thomas Abeel⁶², Matthew Harwood³⁴, Samuel Auer⁶³, Sandor Kelly⁶⁴, Ioannis A Giantsis^{65

66}, Rafał Maciaszek⁶⁷, Maria V Alvanou⁶⁵, Önder Aksu⁶⁸, David M Hayes⁶⁹, Tadashi Kawai⁷⁰, Elena Tricarico⁷¹, Adroit Chakandinakira⁷², Zanethia C Barnett⁷³, Ştefan G Kudor⁷⁴, Andreea E Beda⁷⁵, Lucian Vîlcea⁷⁶, Alexandru E Mizeranschi^{28

77}, Marian Neagul²⁸, Anton Licz⁷⁸, Andra D Cotoarbă⁷⁹, Adam Petrusek⁸⁰, Antonín Kouba⁴, Christopher A Taylor², Lucian Pârvulescu^{28

79}

Affiliations

¹ Institute of Biology Bucharest, Romanian Academy, Bucharest, Romania.
² Illinois Natural History Survey, Prairie Research Institute, Champaign, IL, United States of America.
³ Qtibia Engineering, Râmnicu-Vâlcea, Romania.
⁴ Faculty of Fisheries and Protection of Waters, South Bohemian Research Centre of Aquaculture and Biodiversity of Hydrocenoses, University of South Bohemia in České Budějovice, Vodňany, Czech Republic.
⁵ Museum of Biological Diversity, Department of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, OH, United States of America.
⁶ Research Laboratory, North Carolina Museum of Natural Sciences, Raleigh, NC, United States of America.
⁷ Unit Freshwater habitats, Research Institute for Nature and Forest, Brussels, Belgium.
⁸ Estación Biológica de Doñana-CSIC, Sevilla, Spain.
⁹ Laboratoire Ecologie et Biologie des Interactions - UMR CNRS 7267, Laboratoire EBI - Equipe Ecologie Evolution Symbiose - Batiment B31, Université de Poitiers, Poitiers, France.
¹⁰ Office Français de la Biodiversité, Epinal, France.
¹¹ Department of Organismal Biology, Ecology, and Zoo Science, West Liberty University, West Liberty, WV, United States of America.
¹² New York State Museum, Albany, NY, United States of America.
¹³ Natural Resources Institute Finland, Jyväskylä, Finland.
¹⁴ Fisheries Research Station Baden-Württemberg, Langenargen, Germany.
¹⁵ Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy.
¹⁶ Naturalis Biodiversity Center, Leiden, Netherlands.
¹⁷ Doctoral School of Environmental Science, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary.
¹⁸ Department of Freshwater Fish Ecology, Institute of Aquaculture and Environmental Safety, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary.
¹⁹ School of Biology, Faculty of Biological Science, University of Leeds, Leeds, United Kingdom.
²⁰ Chair of Aquaculture, Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Tartu, Estonia.
²¹ Slovak Environment Agency, Banská Bystrica, Slovakia.
²² Section of Invertebrate Zoology, Carnegie Museum of Natural History, Pittsburgh, PA, United States of America.
²³ Balearic Biodiversity Centre, Department of Biology, University of the Balearic Islands, Palma, Spain.
²⁴ Department of Systematic Zoology and Ecology, Eötvös Loránd University, Budapest, Hungary.
²⁵ Institute of Life Sciences and Technology, Department of Biodiversity, Daugavpils University, Daugavpils, Latvia.
²⁶ Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, Sofia, Bulgaria.
²⁷ Fish Health Unit, Marine Institute, Galway, Ireland.
²⁸ Crayfish Research Centre, Institute for Advanced Environmental Research, West University of Timisoara, Timisoara, Romania.
²⁹ Independent Researcher, Tunja-Boyacá, Colombia.
³⁰ Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile.
³¹ Scientific and Practical Center for Biological Resources of the National Academy of Science of Belarus, Minsk, Belarus.
³² Royal British Columbia Museum, Victoria, British Columbia, Canada.
³³ South African Institute for Aquatic Biodiversity, Makhanda, South Africa.
³⁴ Water@Leeds, School of Biology, Faculty of Biological Sciences, Leeds, United Kingdom.
³⁵ Nature Glenelg Trust, South Australia, Australia.
³⁶ CLLMM Research Centre, Goyder Institute for Water Research, Goolwa, South Australia, Australia.
³⁷ Department of Hydroecology and Water Protection, Institute for Biological Research "Siniša Stanković", National Institute of the Republic of Serbia, University of Belgrade, Belgrade, Serbia.
³⁸ Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
³⁹ Department of River Ecology and Conservation, Senckenberg Research Institute and Natural History Museum Frankfurt, Gelnhausen, Germany.
⁴⁰ Branch for Bioresources, Fraunhofer Institute for Molecular Biology and Applied Ecology, Gießen, Germany.
⁴¹ CAMB, Center for Applied Mathematics and Bioinformatics, Gulf University for Science and Technology, Hawally, Kuwait.
⁴² Biology Department, College of the Holy Cross, Worcester, MA, United States of America.
⁴³ Center of Biology, Geosciences and Environmental Education, Faculty of Education, University of West Bohemia, Plzeň, Czech Republic.
⁴⁴ Faculty of Fisheries, Recep Tayyip Erdogan University, Rize, Turkey.
⁴⁵ DASARI Research Institute of BioResources, Daejeon, Republic of Korea.
⁴⁶ Research Center for Endangered Species, National Institute of Ecology, Yeongyang, Republic of Korea.
⁴⁷ Department Nature and Biodiversity, Brussels Environment, Brussels, Belgium.
⁴⁸ Institute of Nature Conservation, Polish Academy of Sciences, Kraków, Poland.
⁴⁹ Biology Program, Glendon College, York University, Toronto, Ontario, Canada.
⁵⁰ Fisheries Faculty, Fırat University, Elazığ, Turkey.
⁵¹ Ontario Ministry of Natural Resources, Peterborough, Ontario, Canada.
⁵² Marine and Inland Waters Sciences and Technology Department, Faculty of Fisheries, Ege University, Izmir, Turkey.
⁵³ Department of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Poole, Bournemouth, United Kingdom.
⁵⁴ Department of Ecology and Vertebrate Zoology, Faculty of Biology and Environmental Protection, University of Lodz, Łódź, Poland.
⁵⁵ Provincial Centre of Environmental Research, Ghent, Belgium.
⁵⁶ Biology Department, Washington and Lee University, Lexington, VA, United States of America.
⁵⁷ Department of Environmental and Biological Sciences, University of Eastern Finland, Kuopio, Finland.
⁵⁸ Department of Aquatic Animal Health, Norwegian Veterinary Institute, Ås, Norway.
⁵⁹ Biology and Trent School of the Environment, Trent University, Peterborough, Ontario, Canada.
⁶⁰ Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czech Republic.
⁶¹ Department of Basic Sciences, Faculty of Fisheries, Muğla Sıtkı Koçman University, Muğla, Turkey.
⁶² Agro- and Biotechnology, Odisee University of Applied Sciences, Sint-Niklaas, Belgium.
⁶³ Blattfisch e.U., Wels, Austria.
⁶⁴ University of Central Florida, Orlando, FL, United States of America.
⁶⁵ Department of Animal Science, Faculty of Agricultural Sciences, University of Western Macedonia, Florina, Greece.
⁶⁶ Laboratory of Ichthyology & Fisheries, Faculty of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, Thessaloniki, Greece.
⁶⁷ Department of Animal Genetics and Conservation, Institute of Animal Sciences, Warsaw University of Life Sciences, Warsaw, Poland.
⁶⁸ Department of Aquaculture of Fisheries Faculty, Munzur University, Tunceli, Turkey.
⁶⁹ Eastern Kentucky University, Richmond, KY, United States of America.
⁷⁰ Hokkaido Research Organization, Central Fisheries Research Institute, Yoichi Hokkaido, Japan.
⁷¹ Dipartimento di Biologia, Università di Firenze, Sesto Fiorentino, Italy.
⁷² Lake Kariba Fisheries Research Institute, Zimbabwe Parks and Wildlife Management Authority, Kariba, Zimbabwe.
⁷³ USDA Forest Service, Southern Research Station, Center for Bottomland Hardwoods Research, Clemson, SC, United States of America.
⁷⁴ "Simion Mehedinţi - Nature and Sustainable Development" Doctoral School, University of Bucharest, Bucharest, Romania.
⁷⁵ Department of Computer Science and Information Technology, Faculty of Engineering in Foreign Languages, University Politehnica of Bucharest, Bucharest, Romania.
⁷⁶ Department of Economic Informatics and Cybernetics, Bucharest University of Economic Studies, Bucharest, Romania.
⁷⁷ Research and Development Station for Bovine - Arad, Arad, Romania.
⁷⁸ Information Technology & Communications Department, West University of Timisoara, Timisoara, Romania.
⁷⁹ Department of Biology, Faculty of Chemistry, Biology, Geography, West University of Timisoara, Timisoara, Romania.
⁸⁰ Department of Ecology, Faculty of Science, Charles University, Prague, Czech Republic.

^# Contributed equally.

PMID: 39421415
PMCID: PMC11485098
DOI: 10.7717/peerj.18229

World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens

Mihaela C Ion et al. PeerJ. 2024.

. 2024 Oct 14:12:e18229.

doi: 10.7717/peerj.18229. eCollection 2024.

Authors

Affiliations

¹ Institute of Biology Bucharest, Romanian Academy, Bucharest, Romania.
² Illinois Natural History Survey, Prairie Research Institute, Champaign, IL, United States of America.
³ Qtibia Engineering, Râmnicu-Vâlcea, Romania.
⁴ Faculty of Fisheries and Protection of Waters, South Bohemian Research Centre of Aquaculture and Biodiversity of Hydrocenoses, University of South Bohemia in České Budějovice, Vodňany, Czech Republic.
⁵ Museum of Biological Diversity, Department of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, OH, United States of America.
⁶ Research Laboratory, North Carolina Museum of Natural Sciences, Raleigh, NC, United States of America.
⁷ Unit Freshwater habitats, Research Institute for Nature and Forest, Brussels, Belgium.
⁸ Estación Biológica de Doñana-CSIC, Sevilla, Spain.
⁹ Laboratoire Ecologie et Biologie des Interactions - UMR CNRS 7267, Laboratoire EBI - Equipe Ecologie Evolution Symbiose - Batiment B31, Université de Poitiers, Poitiers, France.
¹⁰ Office Français de la Biodiversité, Epinal, France.
¹¹ Department of Organismal Biology, Ecology, and Zoo Science, West Liberty University, West Liberty, WV, United States of America.
¹² New York State Museum, Albany, NY, United States of America.
¹³ Natural Resources Institute Finland, Jyväskylä, Finland.
¹⁴ Fisheries Research Station Baden-Württemberg, Langenargen, Germany.
¹⁵ Department of Life Sciences and Systems Biology, University of Turin, Turin, Italy.
¹⁶ Naturalis Biodiversity Center, Leiden, Netherlands.
¹⁷ Doctoral School of Environmental Science, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary.
¹⁸ Department of Freshwater Fish Ecology, Institute of Aquaculture and Environmental Safety, Hungarian University of Agriculture and Life Sciences, Gödöllő, Hungary.
¹⁹ School of Biology, Faculty of Biological Science, University of Leeds, Leeds, United Kingdom.
²⁰ Chair of Aquaculture, Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Tartu, Estonia.
²¹ Slovak Environment Agency, Banská Bystrica, Slovakia.
²² Section of Invertebrate Zoology, Carnegie Museum of Natural History, Pittsburgh, PA, United States of America.
²³ Balearic Biodiversity Centre, Department of Biology, University of the Balearic Islands, Palma, Spain.
²⁴ Department of Systematic Zoology and Ecology, Eötvös Loránd University, Budapest, Hungary.
²⁵ Institute of Life Sciences and Technology, Department of Biodiversity, Daugavpils University, Daugavpils, Latvia.
²⁶ Institute of Biodiversity and Ecosystem Research, Bulgarian Academy of Sciences, Sofia, Bulgaria.
²⁷ Fish Health Unit, Marine Institute, Galway, Ireland.
²⁸ Crayfish Research Centre, Institute for Advanced Environmental Research, West University of Timisoara, Timisoara, Romania.
²⁹ Independent Researcher, Tunja-Boyacá, Colombia.
³⁰ Instituto de Ciencias Ambientales y Evolutivas, Universidad Austral de Chile, Valdivia, Chile.
³¹ Scientific and Practical Center for Biological Resources of the National Academy of Science of Belarus, Minsk, Belarus.
³² Royal British Columbia Museum, Victoria, British Columbia, Canada.
³³ South African Institute for Aquatic Biodiversity, Makhanda, South Africa.
³⁴ Water@Leeds, School of Biology, Faculty of Biological Sciences, Leeds, United Kingdom.
³⁵ Nature Glenelg Trust, South Australia, Australia.
³⁶ CLLMM Research Centre, Goyder Institute for Water Research, Goolwa, South Australia, Australia.
³⁷ Department of Hydroecology and Water Protection, Institute for Biological Research "Siniša Stanković", National Institute of the Republic of Serbia, University of Belgrade, Belgrade, Serbia.
³⁸ Faculty of Biology, University of Duisburg-Essen, Essen, Germany.
³⁹ Department of River Ecology and Conservation, Senckenberg Research Institute and Natural History Museum Frankfurt, Gelnhausen, Germany.
⁴⁰ Branch for Bioresources, Fraunhofer Institute for Molecular Biology and Applied Ecology, Gießen, Germany.
⁴¹ CAMB, Center for Applied Mathematics and Bioinformatics, Gulf University for Science and Technology, Hawally, Kuwait.
⁴² Biology Department, College of the Holy Cross, Worcester, MA, United States of America.
⁴³ Center of Biology, Geosciences and Environmental Education, Faculty of Education, University of West Bohemia, Plzeň, Czech Republic.
⁴⁴ Faculty of Fisheries, Recep Tayyip Erdogan University, Rize, Turkey.
⁴⁵ DASARI Research Institute of BioResources, Daejeon, Republic of Korea.
⁴⁶ Research Center for Endangered Species, National Institute of Ecology, Yeongyang, Republic of Korea.
⁴⁷ Department Nature and Biodiversity, Brussels Environment, Brussels, Belgium.
⁴⁸ Institute of Nature Conservation, Polish Academy of Sciences, Kraków, Poland.
⁴⁹ Biology Program, Glendon College, York University, Toronto, Ontario, Canada.
⁵⁰ Fisheries Faculty, Fırat University, Elazığ, Turkey.
⁵¹ Ontario Ministry of Natural Resources, Peterborough, Ontario, Canada.
⁵² Marine and Inland Waters Sciences and Technology Department, Faculty of Fisheries, Ege University, Izmir, Turkey.
⁵³ Department of Life and Environmental Sciences, Faculty of Science and Technology, Bournemouth University, Poole, Bournemouth, United Kingdom.
⁵⁴ Department of Ecology and Vertebrate Zoology, Faculty of Biology and Environmental Protection, University of Lodz, Łódź, Poland.
⁵⁵ Provincial Centre of Environmental Research, Ghent, Belgium.
⁵⁶ Biology Department, Washington and Lee University, Lexington, VA, United States of America.
⁵⁷ Department of Environmental and Biological Sciences, University of Eastern Finland, Kuopio, Finland.
⁵⁸ Department of Aquatic Animal Health, Norwegian Veterinary Institute, Ås, Norway.
⁵⁹ Biology and Trent School of the Environment, Trent University, Peterborough, Ontario, Canada.
⁶⁰ Department of Zoology and Fisheries, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences Prague, Prague, Czech Republic.
⁶¹ Department of Basic Sciences, Faculty of Fisheries, Muğla Sıtkı Koçman University, Muğla, Turkey.
⁶² Agro- and Biotechnology, Odisee University of Applied Sciences, Sint-Niklaas, Belgium.
⁶³ Blattfisch e.U., Wels, Austria.
⁶⁴ University of Central Florida, Orlando, FL, United States of America.
⁶⁵ Department of Animal Science, Faculty of Agricultural Sciences, University of Western Macedonia, Florina, Greece.
⁶⁶ Laboratory of Ichthyology & Fisheries, Faculty of Agriculture, Forestry and Natural Environment, Aristotle University of Thessaloniki, Thessaloniki, Greece.
⁶⁷ Department of Animal Genetics and Conservation, Institute of Animal Sciences, Warsaw University of Life Sciences, Warsaw, Poland.
⁶⁸ Department of Aquaculture of Fisheries Faculty, Munzur University, Tunceli, Turkey.
⁶⁹ Eastern Kentucky University, Richmond, KY, United States of America.
⁷⁰ Hokkaido Research Organization, Central Fisheries Research Institute, Yoichi Hokkaido, Japan.
⁷¹ Dipartimento di Biologia, Università di Firenze, Sesto Fiorentino, Italy.
⁷² Lake Kariba Fisheries Research Institute, Zimbabwe Parks and Wildlife Management Authority, Kariba, Zimbabwe.
⁷³ USDA Forest Service, Southern Research Station, Center for Bottomland Hardwoods Research, Clemson, SC, United States of America.
⁷⁴ "Simion Mehedinţi - Nature and Sustainable Development" Doctoral School, University of Bucharest, Bucharest, Romania.
⁷⁵ Department of Computer Science and Information Technology, Faculty of Engineering in Foreign Languages, University Politehnica of Bucharest, Bucharest, Romania.
⁷⁶ Department of Economic Informatics and Cybernetics, Bucharest University of Economic Studies, Bucharest, Romania.
⁷⁷ Research and Development Station for Bovine - Arad, Arad, Romania.
⁷⁸ Information Technology & Communications Department, West University of Timisoara, Timisoara, Romania.
⁷⁹ Department of Biology, Faculty of Chemistry, Biology, Geography, West University of Timisoara, Timisoara, Romania.
⁸⁰ Department of Ecology, Faculty of Science, Charles University, Prague, Czech Republic.

^# Contributed equally.

PMID: 39421415
PMCID: PMC11485098
DOI: 10.7717/peerj.18229

Abstract

Freshwater crayfish are amongst the largest macroinvertebrates and play a keystone role in the ecosystems they occupy. Understanding the global distribution of these animals is often hindered due to a paucity of distributional data. Additionally, non-native crayfish introductions are becoming more frequent, which can cause severe environmental and economic impacts. Management decisions related to crayfish and their habitats require accurate, up-to-date distribution data and mapping tools. Such data are currently patchily distributed with limited accessibility and are rarely up-to-date. To address these challenges, we developed a versatile e-portal to host distributional data of freshwater crayfish and their pathogens (using Aphanomyces astaci, the causative agent of the crayfish plague, as the most prominent example). Populated with expert data and operating in near real-time, World of Crayfish™ is a living, publicly available database providing worldwide distributional data sourced by experts in the field. The database offers open access to the data through specialized standard geospatial services (Web Map Service, Web Feature Service) enabling users to view, embed, and download customizable outputs for various applications. The platform is designed to support technical enhancements in the future, with the potential to eventually incorporate various additional features. This tool serves as a step forward towards a modern era of conservation planning and management of freshwater biodiversity.

Keywords: Aphanomyces astaci; Astacidae; Cambaridae; Endangered species; Invasive species; Open data; Parastacidae; Species distribution.

PubMed Disclaimer

Conflict of interest statement

The authors declare there are no competing interests.

Figures

**Figure 1. Logical workflow.**
Schematic representation of the logical workflow in and around the *World of Crayfish* environment, detailing potential data origins and how the data is processed by WoC before being provided to the end user. The figure was created using Inkscape (https://inkscape.org).

**Figure 2. Overview of the collected data in the *World of Crayfish* platform, and various centralisation of records of natives *versus* non-native (introduced status included).**
(A–B) Crayfish species records at continental level (type locality and *Aphanomyces astaci* highlighted), (C–D) country level record counts, and (E–F) major hydrographic basins record counts. The lower panel integrates data for the best-represented species. The collage was created in Inkscape (https://inkscape.org) using maps generated in ArcGIS Pro (ESRI, Redlands) with freely available basemap layers: (A–B) world continents from ESRI (https://services.arcgis.com/P3ePLMYs2RVChkJx/arcgis/rest/services/World_Continents/FeatureServer), (C–D) administrative boundaries at country level from EuroGeographics (https://ec.europa.eu/eurostat/web/gisco/geodata/administrative-units/countries), and (E–F) major hydrological basins from the Food and Agriculture Organization of the United Nations (https://data.apps.fao.org/catalog//iso/7707086d-af3c-41cc-8aa5-323d8609b2d1). Crayfish silhouettes were drawn by Lucian Pârvulescu.

See this image and copyright information in PMC

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World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens

Affiliations

World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens

Authors

Affiliations

Abstract

Conflict of interest statement

Figures

References

MeSH terms

LinkOut - more resources

Full Text Sources