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. 2024 Oct 17:9:606.
doi: 10.12688/wellcomeopenres.23131.1. eCollection 2024.

The genome sequence of Inga leiocalycina Benth

Rowan J Schley  1 , R Toby Pennington  1   2 , Alex D Twyford  2   3 , Kyle G Dexter  2   3   4 , Catherine Kidner  2   3 , Todd P Michael  5   6   7 ; Royal Botanic Garden Edinburgh Genome Acquisition Lab; Plant Genome Sizing collective; Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team; Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics team; Tree of Life Core Informatics collective
Affiliations

The genome sequence of Inga leiocalycina Benth

Rowan J Schley et al. Wellcome Open Res. .

Abstract

We present a genome assembly from an individual of Inga leiocalycina (Streptophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence has a total length of 948.00 megabases. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules. The assembled mitochondrial genome sequences have lengths of 1,019.42 and 98.74 kilobases, and the plastid genome assembly is 175.51 kb long. Gene annotation of the nuclear genome assembly on Ensembl identified 33,457 protein-coding genes.

Keywords: Fabales; Inga leiocalycina; chromosomal; genome sequence.

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Conflict of interest statement

No competing interests were disclosed.

Figures

Figure 1.
Figure 1.. Photograph of the Inga leiocalycina (drIngLeio1) specimen used for genome sequencing.
Figure 2.
Figure 2.. Genome assembly of Inga leiocalycina, drIngLeio1.1: metrics.
The BlobToolKit snail plot shows N50 metrics and BUSCO gene completeness. The main plot is divided into 1,000 size-ordered bins around the circumference with each bin representing 0.1% of the 949,261,181 bp assembly. The distribution of scaffold lengths is shown in dark grey with the plot radius scaled to the longest scaffold present in the assembly (91,898,272 bp, shown in red). Orange and pale-orange arcs show the N50 and N90 scaffold lengths (73,756,888 and 60,100,043 bp), respectively. The pale grey spiral shows the cumulative scaffold count on a log scale with white scale lines showing successive orders of magnitude. The blue and pale-blue area around the outside of the plot shows the distribution of GC, AT and N percentages in the same bins as the inner plot. A summary of complete, fragmented, duplicated and missing BUSCO genes in the fabales_odb10 set is shown in the top right. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAUJLA01/dataset/CAUJLA01/snail.
Figure 3.
Figure 3.. Genome assembly of Inga leiocalycina, drIngLeio1.1: BlobToolKit GC-coverage plot.
Sequences are coloured by phylum. Circles are sized in proportion to sequence length. Histograms show the distribution of sequence length sum along each axis. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAUJLA01/dataset/CAUJLA01/blob.
Figure 4.
Figure 4.. Genome assembly of Inga leiocalycina drIngLeio1.1: BlobToolKit cumulative sequence plot.
The grey line shows cumulative length for all sequences. Coloured lines show cumulative lengths of sequences assigned to each phylum using the buscogenes taxrule. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAUJLA01/dataset/CAUJLA01/cumulative.
Figure 5.
Figure 5.. Genome assembly of Inga leiocalycina, drIngLeio1.1: Hi-C contact map of the drIngLeio1.1 assembly, visualised using HiGlass.
Chromosomes are shown in order of size from left to right and top to bottom. An interactive version of this figure may be viewed at https://genome-note-higlass.tol.sanger.ac.uk/l/?d=abMPGhQDQSOODVsPWKcBtw.
See this image and copyright information in PMC

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