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. 2024 Oct 17:9:607.
doi: 10.12688/wellcomeopenres.23146.1. eCollection 2024.

The genome sequence of Inga oerstediana Benth

Rowan J Schley  1 , R Toby Pennington  1   2 , Alex D Twyford  2   3 , Kyle G Dexter  2   3   4 , Catherine Kidner  2   3 , Todd P Michael  5   6   7 ; Royal Botanic Garden Edinburgh Genome Acquisition Lab; Plant Genome Sizing collective; Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team; Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics team; Tree of Life Core Informatics collective
Affiliations

The genome sequence of Inga oerstediana Benth

Rowan J Schley et al. Wellcome Open Res. .

Abstract

We present a genome assembly from an individual of Inga oerstediana (Streptophyta; Magnoliopsida; Fabales; Fabaceae). The genome sequence has a total length of 970.60 megabases. Most of the assembly is scaffolded into 13 chromosomal pseudomolecules. The mitochondrial and plastid genome assemblies have lengths of 1,166.81 and 175.18 kilobases, respectively. Gene annotation of this assembly on Ensembl identified 33,334 protein-coding genes.

Keywords: Fabales; Inga oerstediana; chromosomal; genome sequence.

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Conflict of interest statement

No competing interests were disclosed.

Figures

Figure 1.
Figure 1.. Photograph of the Inga oerstediana (drIngOers1) specimen used for genome sequencing collected from the living collection at Royal Botanic Garden Edinburgh, detailing mature leaves (top) and emerging young leaves (bottom).
Figure 2.
Figure 2.. Genome assembly of Inga oerstediana, drIngOers1.1: metrics.
The BlobToolKit snail plot shows N50 metrics and BUSCO gene completeness. The main plot is divided into 1,000 size-ordered bins around the circumference with each bin representing 0.1% of the 971,924,710 bp assembly. The distribution of scaffold lengths is shown in dark grey with the plot radius scaled to the longest scaffold present in the assembly (92,931,256 bp, shown in red). Orange and pale-orange arcs show the N50 and N90 scaffold lengths (74,992,907 and 61,111,451 bp), respectively. The pale grey spiral shows the cumulative scaffold count on a log scale with white scale lines showing successive orders of magnitude. The blue and pale-blue area around the outside of the plot shows the distribution of GC, AT and N percentages in the same bins as the inner plot. A summary of complete, fragmented, duplicated and missing BUSCO genes in the fabales_odb10 set is shown in the top right. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAUJKP01/dataset/CAUJKP01/snail.
Figure 3.
Figure 3.. Genome assembly of Inga oerstediana,: Blob plot of base coverage against GC proportion for sequences in the assembly drIngOers1.1.
Sequences are coloured by phylum. Circles are sized in proportion to sequence length. Histograms show the distribution of sequence length sum along each axis. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAUJKP01/dataset/CAUJKP01/blob.
Figure 4.
Figure 4.. Genome assembly of Inga oerstediana drIngOers1.1: BlobToolKit cumulative sequence plot.
The grey line shows cumulative length for all sequences. Coloured lines show cumulative lengths of sequences assigned to each phylum using the buscogenes taxrule. An interactive version of this figure is available at https://blobtoolkit.genomehubs.org/view/CAUJKP01/dataset/CAUJKP01/cumulative.
Figure 5.
Figure 5.. Genome assembly of Inga oerstediana, drIngOers1.1: Hi-C contact map of the drIngOers1.1 assembly, visualised using HiGlass.
Chromosomes are shown in order of size from left to right and top to bottom. An interactive version of this figure may be viewed at https://genome-note-higlass.tol.sanger.ac.uk/l/?d=cmsVwzjASxmvp38WPTrDbw.
See this image and copyright information in PMC

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