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Review
. 2025 Feb;52(2):268-279.
doi: 10.1111/jcpe.14093. Epub 2024 Dec 18.

Application of Single-Cell Genomics to Animal Models of Periodontitis and Peri-Implantitis

Affiliations
Review

Application of Single-Cell Genomics to Animal Models of Periodontitis and Peri-Implantitis

Akira Hasuike et al. J Clin Periodontol. 2025 Feb.

Abstract

Aims: This narrative review aims to synthesize current knowledge on integrating single-cell genomics technologies with animal models of periodontitis and peri-implantitis.

Review: Single-cell RNA sequencing (scRNAseq) reveals cellular heterogeneity and specific cell roles in periodontitis and peri-implantitis, overcoming the limitations of bulk RNA sequencing. Under controlled conditions and genetic manipulation, animal models facilitate studying disease progression, gene functions and systemic disease links, aiding targeted therapy development. Knockout models have started to elucidate the impact of genetic mutations on periodontal disease and host responses. scRNAseq in animal models has been used to examine connections between periodontitis and systemic diseases, revealing altered immune environments and cellular interactions. Emerging studies are now applying these methods to animal models of peri-implantitis. Integrating these datasets into single-cell and spatially resolved atlases will enable future meta-analyses, providing deeper insights into disease mechanisms considering factors such as sex, strain, and age.

Conclusions: Integrating scRNAseq with animal models advances the understanding of periodontitis and peri-implantitis pathogenesis and precision therapies. The combined use of single-cell and spatial genomics and scRNAseq will further enhance data insights significantly for drug discovery and preclinical testing, making these technologies pivotal in validating animal models and translating findings into clinical practice.

Keywords: animal models; periodontitis; peri‐implantitis spatial biology; single‐cell RNA sequencing.

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Conflict of interest statement

The authors had access to the manuscript and approved the final manuscript. The authors declare that this study was conducted without any commercial or financial relationships that could be construed as potential conflicts of interest. We report that A.H., Q.T.E., and K.M.B. are active members of the Human Cell Atlas. In addition, K.M.B. is a Scientific Advisor at Arcato Laboratories Inc. (Durham, NC, USA). The author views this as a non‐competing financial interest.

Figures

FIGURE 1
FIGURE 1
Characteristics of periodontitis and peri‐implantitis models in various animals.
FIGURE 2
FIGURE 2
Evolution of genomics and periodontal research.

References

    1. Abe, T. , and Hajishengallis G.. 2013. “Optimization of the Ligature‐Induced Periodontitis Model in Mice.” Journal of Immunological Methods 394, no. 1–2: 49–54. 10.1016/j.jim.2013.05.002. - DOI - PMC - PubMed
    1. Ando, Y. , Tsukasaki M., Huynh N. C., et al. 2024. “The Neutrophil‐Osteogenic Cell Axis Promotes Bone Destruction in Periodontitis.” International Journal of Oral Science 16, no. 1: 18. 10.1038/s41368-023-00275-8. - DOI - PMC - PubMed
    1. Armingol, E. , Officer A., Harismendy O., and Lewis N. E.. 2021. “Deciphering Cell–Cell Interactions and Communication From Gene Expression.” Nature Reviews Genetics 22, no. 2: 71–88. 10.1038/s41576-020-00292-x. - DOI - PMC - PubMed
    1. Caetano, A. J. , Redhead Y., Karim F., et al. 2023. “Spatially Resolved Transcriptomics Reveals Pro‐Inflammatory Fibroblast Involved in Lymphocyte Recruitment Through CXCL8 and CXCL10.” eLife 12: e81525. 10.7554/eLife.81525. - DOI - PMC - PubMed
    1. Caetano, A. J. , Sequeira I., and Byrd K. M.. 2022. “A Roadmap for the Human Oral and Craniofacial Cell Atlas.” Journal of Dental Research 101, no. 11: 1274–1288. 10.1177/00220345221110768. - DOI - PMC - PubMed

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