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We report the detection of a clade 2.3.4.4b A(H5N1) reassortant virus with a neuraminidase surface protein derived from a North American lineage low-pathogenic avian influenza virus. This virus caused a widespread and ongoing outbreak across 45 poultry farms in British Columbia, Canada. Isolates from 8 farms reveal a mutation in the neuraminidase protein (H275Y) that is exceptionally rare among clade 2.3.4.4b viruses (present in 0.045% of publicly available clade 2.3.4.4b isolates). NA-H275Y is a well-known marker of resistance to the neuraminidase inhibitor oseltamivir. We demonstrate that this substitution maintains its resistance phenotype on the genetic background of H5N1 clade 2.3.4.4b viruses.
No potential conflict of interest was reported by the author(s).
Figures
Figure 1.
(A) Maximum likelihood phylogenetic trees…
Figure 1.
(A) Maximum likelihood phylogenetic trees inferred with HA (left) and NA (right) gene…
Figure 1.
(A) Maximum likelihood phylogenetic trees inferred with HA (left) and NA (right) gene sequences. Clade labels represent HA and NA subtypes, with an asterisk (*) denoting H11 isolates. Trees are coloured according to isolate pathogenicity. (B) Time-scaled phylogenetic tree based on whole-genome sequences of D1.1 outbreak isolates collected from poultry farms in the Frasier Valley of British Columbia, Canada between October 21 and November 17, 2024. Tree branches are coloured according to the presence or absence of the oseltamivir resistance marker NA: H275Y. (C) Half-maximal inhibitory concentration (IC50) of oseltamivir, peramivir, and zanamivir against an NA-H275Y outbreak variant (A/Chicken/BC/FAV-0289-3/2024) relative to resistant and sensitive controls.
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