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. 2025 Mar;10(3):104482.
doi: 10.1016/j.esmoop.2025.104482. Epub 2025 Mar 3.

Integrated clinico-molecular analysis of gastric cancer in European and Latin American populations: LEGACY project

Affiliations

Integrated clinico-molecular analysis of gastric cancer in European and Latin American populations: LEGACY project

R Dienstmann et al. ESMO Open. 2025 Mar.

Abstract

Background: Gastric cancer (GC) is recognized for intrinsic heterogeneity, although it is similarly approached in Europe and Latin America (LATAM). The LEGACY project aimed to deepen GC molecular understanding through multi-omics analysis in Europe and LATAM GC samples.

Patients and methods: Tumor samples were centrally reviewed for histology, human epidermal growth factor receptor 2 (HER2) expression, and mismatch repair-deficient (dMMR)/microsatellite instability (MSI) status. In addition, we assessed Epstein-Barr virus (EBV) status, programmed death-ligand 1 (PD-L1) combined positive score (CPS), and carried out tissue genomic profiling including tumor mutation burden (TMB) quantification plus targeted transcriptomics for immune microenvironment and cancer cell signaling scores.

Results: In total, 328 GC patients were enrolled. HER2-positive GC and high PD-L1 CPS were more frequent in Europe than in LATAM (9% versus 3% and 15% versus 3%, respectively), whereas EBV was mainly found in LATAM (7%, versus 3% in Europe), and dMMR/MSI tumors were equally distributed (16%). High TMB was enriched in dMMR/MSI and EBV tumors. Mutations in homologous recombination repair (HRR) genes were frequent in both cohorts (24.8% and 14.7% in Europe and LATAM, respectively), and mostly found in dMMR/MSI (63.6%) and intestinal HER2-negative (18.7%) tumors. The prognosis was poor in diffuse HER2-negative GC patients, whose tumors presented an immunosuppressive microenvironment and other distinct pathway activation signatures.

Conclusions: Our findings relate specific molecular alterations of GC tumors from Europe and LATAM to actionable biomarkers for precision cancer therapies. The proposed GC stratification can be implemented in routine care and guide drug development strategies.

Keywords: gastric cancer; gastric cancer biomarkers; gastric cancer epidemiology; precision medicine.

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Figures

Figure 1
Figure 1
LEGACY project summary with samples tracking map and data workflow. ECPC, European Cancer Patient Coalition, Brussels; eCRF, electronic case report form; GENPAT-IPS, GENPAT laboratory + Instituto de Previsión Social, Paraguay; IAF, Instituto Alexander Fleming, Argentina; IHC, immunohistochemistry; INCAN, Instituto Nacional de Cancerología, Mexico; INCLIVA, Instituto de Investigación Sanitaria INCLIVA, Spain; IPATIMUP, Instituto de Patologia e Imunologia Molecular da Universidade do Porto; ISH, in situ hybridization; LATAM: Latin America; PUC, Pontificia Universidad Católica de Chile; ULEI, University of Leipzig, Germany; VHIO, Vall d´ Hebron Institute of Oncology, Spain; VUMC, Vrije Universiteit University Medical Center, The Netherlands.
Figure 2
Figure 2
LEGACY project gastric cancer molecular subtyping with genomic and transcriptomic (immune/pathway) enrichments. CPS, combined positive score; dMMR, mismatch repair-deficient; EBV, Epstein–Barr virus; HER2, human epidermal growth factor receptor 2; MSI, microsatellite instability; MSS, microsatellite stability; PD-L1, programmed death-ligand 1; pMMR, mismatch repair-proficient; TMB, tumor mutation burden.
Figure 3
Figure 3
LEGACY project molecular data in samples from European (EU) or Latin America (LATAM) countries. (A) LEGACY molecular subtypes classification. (B) KI67. (C) PD-L1 CPS score in MSS/pMMR samples. (D) TMB counts in MSS/pMMR samples. CPS, combined positive score; dMMR, mismatch repair-deficient; EBV, Epstein–Barr virus; HER2, human epidermal growth factor receptor 2; MSI, microsatellite instability; MSS, microsatellite stability; PD-L1, programmed death-ligand 1; pMMR, mismatch repair-proficient; TMB, tumor mutation burden.
Figure 4
Figure 4
Transcriptomic enrichments in LEGACY project gastric cancer molecular subtyping. dMMR, mismatch repair-deficient; EBV, Epstein–Barr virus; HER2, human epidermal growth factor receptor 2; MSI, microsatellite instability; TGF, transforming growth factor.

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