Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2025 May;103(5):511-529.
doi: 10.1007/s00109-025-02533-0. Epub 2025 Mar 25.

DNA-RNA hybrids in inflammation: sources, immune response, and therapeutic implications

Affiliations
Review

DNA-RNA hybrids in inflammation: sources, immune response, and therapeutic implications

Litao Chen et al. J Mol Med (Berl). 2025 May.

Abstract

Cytoplasmic DNA-RNA hybrids are emerging as important immunogenic nucleic acids, that were previously underappreciated. DNA-RNA hybrids, formed during cellular processes like transcription and replication, or by exogenous pathogens, are recognized by pattern recognition receptors (PRRs), including cGAS, DDX41, and TLR9, which trigger immune responses. Post-translational modifications (PTMs) including ubiquitination, phosphorylation, acetylation, and palmitoylation regulate the activity of PRRs and downstream signaling molecules, fine-tuning the immune response. Targeting enzymes involved in DNA-RNA hybrid metabolism and PTMs regulation offers therapeutic potential for inflammatory diseases. Herein, we discuss the sources, immune response, and therapeutic implications of DNA-RNA hybrids in inflammation, highlighting the significance of DNA-RNA hybrids as potential targets for the treatment of inflammation.

Keywords: DNA-RNA hybrids; Immune response; Inflammatory therapy; PTMs regulation; cGAS-STING pathway.

PubMed Disclaimer

Conflict of interest statement

Declarations. Ethics approval: Unethical issues (including plagiarism, informed consent, misconduct, data fabrication, forgery, duplication and/or submission, and redundancy) have been investigated by the authors. Consent for publication: All authors consent for this submission. Competing interests: The authors declare no competing interests.

References

    1. Singh RS, Vidhyasagar V, Yang S, Arna AB, Yadav M, Aggarwal A, Aguilera AN, Shinriki S, Bhanumathy KK, Pandey K, Xu A, Rapin N, Bosch M, DeCoteau J, Xiang J, Vizeacoumar FJ, Zhou Y, Misra V, Matsui H, Ross SR, Wu Y (2022) DDX41 is required for cGAS-STING activation against DNA virus infection. Cell Rep 39:110856. https://doi.org/10.1016/j.celrep.2022.110856 - DOI - PubMed - PMC
    1. Paludan SR, Bowie AG (2013) Immune sensing of DNA. Immunity 38:870–880. https://doi.org/10.1016/j.immuni.2013.05.004 - DOI - PubMed - PMC
    1. Sato H, Hoshi M, Ikeda F, Fujiyuki T, Yoneda M, Kai C (2021) Downregulation of mitochondrial biogenesis by virus infection triggers antiviral responses by cyclic GMP-AMP synthase. PLOS Pathog 17:e1009841. https://doi.org/10.1371/journal.ppat.1009841 - DOI - PubMed - PMC
    1. Baatarjav C, Komada T, Karasawa T, Yamada N, Sampilvanjil A, Matsumura T, Takahashi M (2022) dsDNA-induced AIM2 pyroptosis halts aberrant inflammation during rhabdomyolysis-induced acute kidney injury. Cell Death Differ 29:2487–2502. https://doi.org/10.1038/s41418-022-01033-9 - DOI - PubMed - PMC
    1. Rehwinkel J, Gack MU (2020) RIG-I-like receptors: their regulation and roles in RNA sensing. Nat Rev Immunol 20:537–551. https://doi.org/10.1038/s41577-020-0288-3 - DOI - PubMed - PMC

LinkOut - more resources