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. 2025 Mar 28:2025:10.17912/micropub.biology.001554.
doi: 10.17912/micropub.biology.001554. eCollection 2025.

Analysis of the microbial diversity in the fecal material of the critically endangered orangutan

Carly M Smith  1 , Dan Powell  2 , Xiaoling Wan  3 , JinSong Zheng  4 , Durward L Bevis  1 , Richard W McLaughlin  1
Affiliations

Analysis of the microbial diversity in the fecal material of the critically endangered orangutan

Carly M Smith et al. MicroPubl Biol. .

Abstract

The orangutan ( Pongo spp.) is a critically endangered species. Today, populations of these animals are rapidly declining by up to 75%. They are found in the tropical rainforests of Borneo and Sumatra. In this study, using a next generation sequencing approach, the bacterial and fungal diversity in the fecal material of orangutans living in the Racine Zoo were investigated. The most predominant bacterial phyla were the Bacillota along with Bacteroidota. The most predominant fungal phylum was Ascomycota. Finally, the various functions of the bacterial communities present in the fecal material were predicted with PICRUSt2 using the KEGG database.

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Conflict of interest statement

The authors declare that there are no conflicts of interest present.

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References

    1. Ancrenaz DM, Oram F, Lackman I. 2017. Orangutan ( Pongo ). In The International Encyclopedia of Primatology, Vol. II, US: John Wiley and Sons.
    1. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson CHD, Willis AD, Xu ZZ, Zaneveld JR, Zhang Y, Zhu Q, Knight R, Caporaso JG. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol. 2019 Aug 1;37(8):852–857. doi: 10.1038/s41587-019-0209-9. - DOI - PMC - PubMed
    1. Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP. DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods. 2016 May 23;13(7):581–583. doi: 10.1038/nmeth.3869. - DOI - PMC - PubMed
    1. Chapman CA, Bicca-Marques JC, Dunham AE. 2020. Primates can be a rallying symbol to promote tropical forest restoration. Folia Primatologica 91: 669-687. - PubMed
    1. Douglas GM, Maffei VJ, Zaneveld JR, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020 Jun 1;38(6):685–688. doi: 10.1038/s41587-020-0548-6. - DOI - PMC - PubMed

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