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. 2025 Apr 9;26(8):3523.
doi: 10.3390/ijms26083523.

Retinoblastoma: Molecular Evaluation of Tumor Samples, Aqueous Humor, and Peripheral Blood Using a Next-Generation Sequence Panel

Thais Biude Mendes  1 , Indhira Dias Oliveira  1 , Francine Tesser Gamba  1   2 , Fernanda Teresa Lima  1   3 , Bruna Fernanda Silva Cardoso Morales  4 , Carla Renata Donato Macedo  4 , Luiz Fernando Teixeira  4   5 , Silvia Regina Caminada de Toledo  1   2
Affiliations

Retinoblastoma: Molecular Evaluation of Tumor Samples, Aqueous Humor, and Peripheral Blood Using a Next-Generation Sequence Panel

Thais Biude Mendes et al. Int J Mol Sci. .

Abstract

Retinoblastoma was one of the first malignant tumors to be described as a genetic disease and its development occurs from the loss of function of the retinoblastoma gene (RB1). The difficulty in accessing the tumor during diagnosis highlights the need for non-invasive diagnostic methods. Studies have shown that liquid biopsy, obtained from any fluid material in the body, for example blood, contains free tumor cells and free and circulating DNA or RNA, making it a convenient tool for diagnosis and prognosis during cancer treatment without the need for invasive procedures. Taking advantage of these events, given this situation, we investigated molecular alterations in samples from retinoblastoma cases, using the NGS strategy as a powerful tool for characterization and aid in diagnosis and prognosis. Genomic data from 76 patients diagnosed with retinoblastoma, comprising 162 samples, tumor (TU), aqueous humor (AH), and peripheral blood (PB), were analyzed using the Oncomine Childhood Cancer Research Panel (OCCRA®). A total of 22 altered genes were detected, and 54 variants. Of the 76 cases, 29 included paired tumor (TU), aqueous humor (AH), and peripheral blood (PB) samples from the same patient. Alterations in the RB1 gene were detected in 16 of these 29 cases, with concordant alterations identified across all three sample types in three patients. In 12 out of 29 patients, the same genetic alteration was found in both TU and AH. In conclusion, the OCCRA panel enabled the detection, in different samples, of molecular alterations in the RB1 gene, as well as CNAs in the MYCN, ABL2, and MDM4 genes. Limitations of AH were observed, primarily due to the small volume of material available and the consequently low concentration of cell-free DNA (cfDNA). However, as AH provides a viable alternative for analyzing tumors, inaccessible to traditional biopsy methods, liquid biopsy holds significant potential to improve diagnostic accuracy and guide treatment strategies in retinoblastoma cases.

Keywords: aqueous humor; liquid biopsy; next-generation sequence panel; retinoblastoma.

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Conflict of interest statement

The authors have no conflicts of interest to declare.

Figures

Figure 1
Figure 1
Genetic alterations identified in samples. Frequency of variant class (A) and genetic alterations identified in aqueous humor (B), tumor (C), and peripheral blood (D).
Figure 2
Figure 2
Genomic landscape of 29 RB cases paired samples (TU, AH, and PB).
See this image and copyright information in PMC

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References

    1. Dimaras H., Corson T., Cobrinik D., White A., Zhao J., Munier F.L., Abramson D.H., Shields C.L., Chantada G.L., Njuguna F., et al. Retinoblastoma. Nat. Rev. Dis. Primers. 2015;1:15021. doi: 10.1038/nrdp.2015.21. - DOI - PMC - PubMed
    1. Yun J., Li Y., Xu C.T., Pan B.R. Epidemiology and Rb1 gene of retinoblastoma. Int. J. Ophthalmol. 2011;4:103–109. doi: 10.3980/j.issn.2222-3959.2011.01.24. - DOI - PMC - PubMed
    1. Karcioglu Z.A., Gordon R.A., Karcioglu G.L. Tumor seeding in ocular fine needle aspiration biopsy. Ophthalmology. 1985;92:1763–1767. doi: 10.1016/S0161-6420(85)34105-2. - DOI - PubMed
    1. Karcioglu Z.A. Fine needle aspiration biopsy (FNAB) for retinoblastoma. Retina. 2002;22:707–710. doi: 10.1097/00006982-200212000-00004. - DOI - PubMed
    1. Eide N., Walaas L. Fine-needle aspiration biopsy and other biopsies in suspected intraocular malignant disease: A review. Acta Ophthalmol. 2009;87:588–601. doi: 10.1111/j.1755-3768.2009.01637.x. - DOI - PubMed

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