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. 2025 May 5;14(9):1389.
doi: 10.3390/plants14091389.

Bacillus Bio-Organic Fertilizer Altered Soil Microorganisms and Improved Yield and Quality of Radish (Raphanus sativus L.)

Affiliations

Bacillus Bio-Organic Fertilizer Altered Soil Microorganisms and Improved Yield and Quality of Radish (Raphanus sativus L.)

Yingbin Qi et al. Plants (Basel). .

Abstract

Excessive use of fertilizers will not only cause the enrichment of soil N nutrients, soil secondary salinization, soil acidification, and an imbalance of the soil microbial community structure, but will also lead to the nitrate content of vegetables and the ground water exceeding the standard. The application of bio-organic fertilizer could reduce the amount of mineral fertilizer used. However, the effects of nitrogen reduced with different bio-organic fertilizers on soil chemical properties, microbial community structure, and the yield and quality of radish are not clear. In a field experiment, we designed six fertilization treatments: no fertilization (CK), conventional fertilization (T1), a total nitrogen reduction of 20% (T2), and a total nitrogen reduction of 20% with "No. 1", "Seek" or "Jiajiapei" bio-organic fertilizers. The results showed that nitrogen reduction of 20% with Bacillus bio-organic fertilizer (N1) significantly increased the organic matter, pH, total nitrogen content, and the relative abundance of Bacillus and Streptomyce in the soil compared with T1. RDA analysis showed that the pH, organic matter content, invertase and fluorescein diacetate enzyme activity of the soil were significantly correlated with the soil microbial community structure. In addition, the yield and Vc content in radish were increased with the application of bio-organic fertilizers, while on the contrary, the nitrate and cellulose content were decreased, and the N1 treatment showed the best effect. Moreover, the yield had a significant positive correlation with Bacillus. Overall, nitrogen reduction with bio-organic fertilizers, especially full-effective "No. 1" enriched with Bacillus, could alter the soil microbial community structure and effectively improve soil fertility, which in turn enhanced the yield and quality of radish. An application of Bacillus bio-organic fertilizer was an effective strategy to improve soil quality and vegetable safety.

Keywords: bio-organic fertilizer; radish; rhizosphere soil; soil microbial community composition.

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Conflict of interest statement

The authors declare no conflicts of interest.

Figures

Figure 1
Figure 1
Relative abundance of bacteria (A) at the phylum level; relative abundance of bacteria (B) at the genus level; principal coordinate analysis (PCoA) plots of bacteria (C); redundancy analysis of dominant bacteria (D) associated with soil properties. Note: TN: soil total nitrogen content, OM: soil organic matter, ACP: acid phosphatase activity, AP: available phosphorus, UREA: urease activity of soil, INV: invertase activity, FDA: fluorescein diacetate activity. The same below.
Figure 2
Figure 2
Relative abundances of fungi (A) at the phylum level; relative abundance of fungi (B) at the genus level; principal coordinate analysis (PCoA) plots of fungi (C); redundancy analysis of dominant fungi (D) associated with soil properties.
Figure 3
Figure 3
Heatmap of the correlations among the dominant (the top 20) genera associated with yield and quality. (A) Bacterial; (B) fungi. Note: * The correlation was significant at the 0.05 level (double-tailed). ** The correlation was significant at the 0.01 level (double-tailed). NI: nitrate content, VC: vitamin C content, YE: yield per plant, SP: soluble protein content.
Figure 4
Figure 4
Effects of nitrogen reduced 20% combined with bio-organic fertilizer on yield and quality of radish. (A) Yield per plant; (B) cellulose; (C) soluble protein content; (D) vitamin C content; (E) nitrate content; (F) soluble sugar content. Note: Significant differences analysis was performed with Duncan’s multiple range test (p < 0.05) with SPSS (IBM, Chicago, IL, USA, version 22.0), column bar means standard error, different small letters represent significant differences at the 0.05 level.

References

    1. Liu B., Wang X., Ma L., Chadwick D., Chen X. Combined applications of organic and synthetic nitrogen fertilizers for improving crop yield and reducing reactive nitrogen losses from China’s vegetable systems: A meta-analysis. Environ. Pollut. 2021;269:116143. doi: 10.1016/j.envpol.2020.116143. - DOI - PubMed
    1. Yang F., Tian J., Fang H., Gao Y., Xu M., Lou Y., Zhou B., Kobyakov Y. Functional soil organic matter fractions, microbial community, and enzyme activities in a mollisol under 35 years manure and mineral fertilization. J. Soil Sci. Plant Nutr. 2019;19:430–439. doi: 10.1007/s42729-019-00047-6. - DOI
    1. Zhu J., Peng H., Ji X., Li C., Li S. Effects of reduced inorganic fertilization and rice straw recovery on soil enzyme activities and bacterial community in double-rice paddy soils. Eur. J. Soil Biol. 2019;94:103116. doi: 10.1016/j.ejsobi.2019.103116. - DOI
    1. Miao Y., Stewart B.A., Zhang F. Long-term experiments for sustainable nutrient management in China. Rev. Agron. Sustain. Dev. 2011;31:397–414. doi: 10.1051/agro/2010034. - DOI
    1. Flores-Félix J.D., Menéndez E., Rivera P.L., Marcos M.R., Hidalogo M.P., Mateos P., Martínez-Molina E., Velázquez M.d.l.E., García-Fraile P., Rivas R. Use of rhizobium leguminosarum as a potential biofertilizer for lactuca sativa and daucus carota crops. J. Plant Nutr. Soil Sci. 2013;176:876–882. doi: 10.1002/jpln.201300116. - DOI

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