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. 2025 May 30;20(5):e0324035.
doi: 10.1371/journal.pone.0324035. eCollection 2025.

Identification of novel drug targets through integrative PWAS of brain and plasma proteins with Ulcerative Colitis GWAS

Ningning Liu  1   2 , Yi Hou  2   3 , Miao Yu  1 , Gaihong Liu  1 , Yingxue Xu  1 , Qiang Jiang  1 , Dongli Wang  1 , Lianzhu Wang  1 , Yujie Zhao  1
Affiliations

Identification of novel drug targets through integrative PWAS of brain and plasma proteins with Ulcerative Colitis GWAS

Ningning Liu et al. PLoS One. .

Abstract

Previous genome-wide association studies (GWAS) have identified various risk variants for ulcerative colitis (UC), but there is a lack of evidence showing how these variants contribute to the development of UC. We employed an integrated pipeline to effectively translate genetic associations in order to identify pathogenic genes for UC.By combining GWAS data for UC with proteomic data from the human brain and plasma, we conducted a protein-wide association study (PWAS) and utilized protein-protein interaction (PPI) network analysis to screen for potential key proteins. Subsequently, causal analysis was performed to assess the potential causal relationships between these proteins and the risk of developing UC.Multiple genes associated with UC were identified in the human brain and plasma proteomes, including known genes such as TYK2 and STAT3, as well as newly discovered genes such as NARS2. PPI networks revealed strong interactions among proteins, including TYK2, STAT3, and IL23R. Causal analysis indicated that 11 risk genes, including FCGR2A, showed significant causal associations with UC, and were linked to key processes related to immune regulation and inflammatory responses, suggesting their potential roles in the pathogenesis of UC.This study integrated GWAS and PWAS data to identify risk genes associated with UC, providing new insights into the disease's pathogenesis and potential therapeutic targets.

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Conflict of interest statement

The authors have declared that no competing interests exist.

Figures

Fig 1
Fig 1. Manhattan plots of PWAS results in brain tissue and blood, and conditional association analysis.
Fig 2
Fig 2. PPI network and pathways among the 14 significant proteins identified in PWAS for UC.
See this image and copyright information in PMC

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