Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2025 Sep;48(9):6897-6911.
doi: 10.1111/pce.15664. Epub 2025 Jun 5.

Plastids in a Pinch: Coordinating Stress and Developmental Responses Through Retrograde Signalling

Affiliations
Review

Plastids in a Pinch: Coordinating Stress and Developmental Responses Through Retrograde Signalling

Elizabeth van Veen et al. Plant Cell Environ. 2025 Sep.

Abstract

Plastids are crucial for fuelling and regulating plant growth and development. Photosynthesising chloroplasts provide energy for growth, while other plastids play additional key roles in various aspects of plant physiology. For function and development, plastids greatly depend on nucleus-encoded proteins, and they can modulate the synthesis of these proteins by sending retrograde signals to the nucleus. These signals communicate the developmental and operational status of the plastid, both of which are sensitive to the environment. Abiotic stressors such as drought, salinity, and suboptimal light and temperature conditions can induce changes in chloroplast metabolism, ultrastructure and cellular positioning. In response to specific environmental triggers, retrograde signals reprogramme nuclear gene expression to fine-tune plastid form and function, but also influence whole-plant morphology. Over the past years, the chloroplast responses to stress have become clearer. Various sources of retrograde signals, derived from plastid metabolism, plastid gene expression and altered photosynthetic redox balance, are now known to directly interfere with canonical signalling pathways. However, most of what is known about retrograde signalling originates from studies using artificial stressors, such as chemical treatments or genetic mutations, and its importance in natural environments is still poorly understood. This review highlights the understanding of plastid responses to the environment, as well as the impact generated downstream of retrograde signals, to better understand the role of plastids in abiotic stress resilience of flowering plants.

Keywords: abiotic stress; chloroplasts; environmental adaptation; gene expression regulation; genomes uncoupled; photosynthesis; plant development; retrograde signalling.

PubMed Disclaimer

Conflict of interest statement

The authors declare no conflicts of interest.

Figures

Figure 1
Figure 1
Abiotic stressors affect chloroplast ultrastructure (A) and chloroplast positioning within the cell (B). Chloroplast ultrastructure changes under stress include rounding of the chloroplast, increased plastoglobuli size and number, stromule formation, dismantlement of the thylakoid network, grana unstacking, altered numbers of starch granules and chloroplast envelope damage (as indicated by dashed line). (B) Chloroplast positioning is altered under different light and temperature conditions. Under low light, chloroplasts orient along periclinal cell walls, but under high light, they orient along anticlinal cell walls. Positioning in the dark conditions differs between species, with the chloroplast moving to the bottom of the cell in Arabidopsis, but aligning along the anticlinal cell walls in other species. In response to cold under low‐light conditions, chloroplasts also move to the anticlinal cell walls. Representative cells show a side view.
Figure 2
Figure 2
Simplified model for tetrapyrrole biosynthesis, the methylerythritol phosphate pathway and carotenoid biosynthesis pathways in plants. Single arrows indicate direct steps, double arrows indicate indirect steps, enzymes are in italics, and gene names are in bold italics. Boxes correspond to labels directly above/below. Abbreviations: ABA abscisic acid, CEH1 Constitutively Expressing HYDROPEROXIDE LYASE 1, CRTISO CAROTENOID ISOMERASE, DXR 1‐DeoxyXylulose‐5‐phosphate Reductoisomerase, DXS 1‐DeoxyXylulose‐5‐phosphate Synthase, FLU FLUORESCENT IN BLUE LIGHT, FSM fosmidomycin, GUN GENOMES UNCOUPLED, HEMA HEME A, NF norflurazon, PDS phytoene desaturase, POR protochlorophyllide oxidoreductase, PSY phytoene synthase, ZDS ζ ‐carotene desaturase. [Color figure can be viewed at wileyonlinelibrary.com]
Figure 3
Figure 3
Simplified schematic representing four major retrograde signalling sources: (1) intermediates of the tetrapyrrole biosynthesis pathway, (2) signals from altered plastid gene expression, (3) photosynthesis‐derived signals and (4) signals arising from other metabolic pathways. Grey arrows indicate retrograde signals with either promotion (arrowhead) or repression (block arrow) of Singlet Oxygen Responsive Genes/Stress Responsive Genes or Photosynthesis Associated Nuclear Genes/Golden Like transcription factors. The chloroplast is shown in green, and the nucleus is shown in orange. [Color figure can be viewed at wileyonlinelibrary.com]

Similar articles

  • A Holistic Investigation of Arabidopsis Proteomes Altered in Chloroplast Biogenesis and Retrograde Signalling Identifies PsbO as a Key Regulator of Chloroplast Quality Control.
    Di Silvestre D, Jeran N, Domingo G, Vannini C, Marsoni M, Fortunato S, de Pinto MC, Tamborrino A, Negroni YL, Zottini M, Hong LT, Lomagno A, Mauri P, Pesaresi P, Tadini L. Di Silvestre D, et al. Plant Cell Environ. 2025 Aug;48(8):6373-6396. doi: 10.1111/pce.15611. Epub 2025 May 14. Plant Cell Environ. 2025. PMID: 40366233 Free PMC article.
  • Short-Term Memory Impairment.
    Cascella M, Al Khalili Y. Cascella M, et al. 2024 Jun 8. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan–. 2024 Jun 8. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan–. PMID: 31424720 Free Books & Documents.
  • Sexual Harassment and Prevention Training.
    Cedeno R, Bohlen J. Cedeno R, et al. 2024 Mar 29. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan–. 2024 Mar 29. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2025 Jan–. PMID: 36508513 Free Books & Documents.
  • The Black Book of Psychotropic Dosing and Monitoring.
    DeBattista C, Schatzberg AF. DeBattista C, et al. Psychopharmacol Bull. 2024 Jul 8;54(3):8-59. Psychopharmacol Bull. 2024. PMID: 38993656 Free PMC article. Review.
  • Management of urinary stones by experts in stone disease (ESD 2025).
    Papatsoris A, Geavlete B, Radavoi GD, Alameedee M, Almusafer M, Ather MH, Budia A, Cumpanas AA, Kiremi MC, Dellis A, Elhowairis M, Galán-Llopis JA, Geavlete P, Guimerà Garcia J, Isern B, Jinga V, Lopez JM, Mainez JA, Mitsogiannis I, Mora Christian J, Moussa M, Multescu R, Oguz Acar Y, Petkova K, Piñero A, Popov E, Ramos Cebrian M, Rascu S, Siener R, Sountoulides P, Stamatelou K, Syed J, Trinchieri A. Papatsoris A, et al. Arch Ital Urol Androl. 2025 Jun 30;97(2):14085. doi: 10.4081/aiua.2025.14085. Epub 2025 Jun 30. Arch Ital Urol Androl. 2025. PMID: 40583613 Review.

References

    1. Adhikari, N. D. , Froehlich J. E., Strand D. D., Buck S. M., Kramer D. M., and Larkin R. M.. 2011. “GUN4‐porphyrin Complexes Bind the ChlH/GUN5 Subunit of Mg‐Chelatase and Promote Chlorophyll Biosynthesis in Arabidopsis.” Plant Cell 23: 1449–1467. - PMC - PubMed
    1. Alawady, A. E. , and Grimm B.. 2005. “Tobacco Mg Protoporphyrin IX Methyltransferase Is Involved in Inverse Activation of Mg Porphyrin and Protoheme Synthesis.” Plant Journal 41: 282–290. - PubMed
    1. Allamand, A. , Piechowiak T., Lièvremont D., Rohmer M., and Grosdemange‐Billiard C.. 2023. “The Multifaceted MEP Pathway: Towards New Therapeutic Perspectives.” Molecules 28: 1403. - PMC - PubMed
    1. Alvarez, D. , Voss B., Maass D., et al. 2016. “Carotenogenesis Is Regulated by 5'UTR‐Mediated Translation of Phytoene Synthase Splice Variants.” Plant Physiology 172: 2314–2326. - PMC - PubMed
    1. Ankele, E. , Kindgren P., Pesquet E., and Strand A.. 2007. “In Vivo Visualization of Mg‐Protoporphyrin IX, a Coordinator of Photosynthetic Gene Expression in the Nucleus and the Chloroplast.” Plant Cell 19: 1964–1979. - PMC - PubMed

LinkOut - more resources