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Comparative Study
. 2025 Jun 4:15:1593818.
doi: 10.3389/fcimb.2025.1593818. eCollection 2025.

Comparison of bronchoalveolar lavage fluid mNGS and sputum culture in the clinical application of severe pneumonia

Na Gao  1   2 , Jianwei Yin  1 , Na Niu  1 , Wendong Hao  1   2 , Xiushan Chen  1 , Tian Yang  3
Affiliations
Comparative Study

Comparison of bronchoalveolar lavage fluid mNGS and sputum culture in the clinical application of severe pneumonia

Na Gao et al. Front Cell Infect Microbiol. .

Abstract

Objective: The purpose of this study is to compare the clinical application value of bronchoalveolar lavage fluid (BALF) mNGS and sputum culture in severe pulmonary infections, and to provide guidance for clinicians in selecting the appropriate testing method.

Methods: This study collected 105 patients diagnosed with severe pneumonia, of which 55 patients who underwent BALF mNGS. We compared the pathogen detection rates, length of stay and mortality rate, treatment, and pathogen species between BALF mNGS group and sputum culture group.

Results: The pathogen detection rate in BALF mNGS group was significantly higher than that in sputum culture group (P<0.0001). The length of hospital stay in the BALF mNGS group was shorter than that in the sputum group (P=0.0093). There was no statistically significant difference in mortality rate between the two groups (P=0.26). However, BALF mNGS group had a lower antibiotic usage rate than the sputum culture group (P=0.0491). According to the mNGS results, initial antipathogenic treatment was modified in 67.27% of patients. In BALF mNGS group, the main pathogens detected included Mycoplasma pneumoniae, Mycobacterium tuberculosis (MTB) and Haemophilus influenzae (HI). The sputum culture group mainly included: MTB, HI.

Conclusion: BALF mNGS effectively and rapidly identifies pathogens, helping doctors quickly diagnose severe pneumonia pathogens. Combined with the patient's medical history, laboratory results and imaging, clinical doctors can adjust the patient's treatment plan in time. This has potential advantages in improving the cure rate of severe pneumonia patients, reducing the length of hospital stay, and improving the prognosis.

Keywords: BALF mNGS; pathogen; severe pneumonia; sputum culture; treatment.

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Conflict of interest statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Figures

Figure 1
Figure 1
Mixed infections and pathogens identified by BALF mNGS in 55 severe pneumonia patients. (A) number of severe pneumonia patients with mixed infections; (B) number of severe pneumonia patients infected with pathogens; (C) number of drug-resistant bacteria. MRMP, macrolide-resistant mycoplasma pneumoniae; CRAB, carbapenem-resistant acinetobacter baumannii.
Figure 2
Figure 2
Pathogens Detected by sputum culture in 50 severe pneumonia patients. number of severe pneumonia patients with pathogens.
See this image and copyright information in PMC

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References

    1. Bakaletz L. O. (2017). Viral-bacterial co-infections in the respiratory tract. Curr. Opin. Microbiol. 35, 30–35. doi: 10.1016/j.mib.2016.11.003 - DOI - PMC - PubMed
    1. Bassi C., Guerriero P., Pierantoni M., Callegari E., Sabbioni S. (2022). Novel virus identification through metagenomics: A systematic review. Life (Basel). 12, 2048. doi: 10.3390/life12122048 - DOI - PMC - PubMed
    1. Bein T., Weber-Carstens S., Apfelbacher C. (2018). Long-term outcome after the acute respiratory distress syndrome: different from general critical illness? Curr. Opin. Crit. Care 24, 35–40. doi: 10.1097/MCC.0000000000000476 - DOI - PMC - PubMed
    1. Bosch A. A., Biesbroek G., Trzcinski K., Sanders E. A., Bogaert D. (2013). Viral and bacterial interactions in the upper respiratory tract. PloS Pathog. 9, e1003057. doi: 10.1371/journal.ppat.1003057 - DOI - PMC - PubMed
    1. Carroll K. C., Pfaller M. A., Landry M. L., McAdam A. J., Patel R., Richter S. S., Warnock D. W. (Eds.) (2019). Manual of clinical microbiology (12th ed.) (United States of America: American Society for Microbiology; ).

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