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Review
. 2025 Jul 7:13:1606573.
doi: 10.3389/fbioe.2025.1606573. eCollection 2025.

Harnessing 3D cell models and high-resolution imaging to unveil the mechanisms of nanoparticle-mediated drug delivery

Affiliations
Review

Harnessing 3D cell models and high-resolution imaging to unveil the mechanisms of nanoparticle-mediated drug delivery

Alannah S Chalkley et al. Front Bioeng Biotechnol. .

Abstract

Nanoparticles and nanosized materials offer huge potential in the field of drug delivery. One key aspect that dictates their successful development is the need to understand how they interact with cells at both the macro and molecular level. Delineating such interactions is vital if nanomaterials are to be targeted not only to particular organs and tissues, but also to individual cell types and ultimately specific subcellular locations. In this regard, the development of appropriate in vitro cell models is an essential prerequisite before animal and human trials. In recent years, as the methodology for their growth has been refined, there has been a huge expansion in the use of pre-clinical 3D cell culture models, particularly spheroids and organoids. These models are attractive because they can be combined with high-resolution fluorescence imaging to provide real-time information on how nanomaterials interact with cells. Confocal fluorescence microscopy and its associated modalities, along with high-content screening and analysis, are powerful techniques that allow researchers the possibility of extracting spatial and temporal information at multiple levels from cells and entire 3D assemblies. In this review, we summarise the state of this field, paying particular emphasis to how imaging of such models is now beginning to provide rich quantitative data about nanomaterial entry and trafficking in cells growing in 3D. We also offer a perspective on the challenges faced by such approaches, and the important questions that the drug delivery field still needs to address.

Keywords: 3D cell models; drug delivery; fluorescence microscopy; high-content analysis; nanoparticles; organoids; spheroids.

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Conflict of interest statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.

Figures

FIGURE 1
FIGURE 1
Schematic representation of several commonly used 3D cell culture methods. Methods to generate spheroids as shown in (A) and (B) are generally considered as scaffold-based methods, whereas the methods shown in (C–G) are considered scaffold-free. The method shown in (H) is a hybrid between scaffold-based and scaffold-free.
FIGURE 2
FIGURE 2
Endocytosis is a process by which cells internalise molecules through various membrane pathways. These pathways include clathrin-mediated endocytosis (CME), and clathrin-independent mechanisms such as caveolae-dependent endocytosis, macropinocytosis and phagocytosis. Each pathway involves distinct membrane remodelling events, such as the formation of clathrin-coated vesicles or caveolae, and dictates how nanoparticles (NPs) are internalised and trafficked within the cell to a variety of destinations, including transfer to other neighbouring cells.

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