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. 2025 Jul 15:S0969-2126(25)00248-5.
doi: 10.1016/j.str.2025.06.013. Online ahead of print.

Regulatory mechanisms of PP2A complex assembly driven by physicochemical differences in A-subunit isoforms

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Regulatory mechanisms of PP2A complex assembly driven by physicochemical differences in A-subunit isoforms

Alexander Day et al. Structure. .

Abstract

Protein phosphatase 2A (PP2A) is crucial for regulating cellular pathways, with its holoenzyme assembly affecting enzyme function and substrate selection. The PP2A holoenzyme comprises scaffold A-, regulatory B-, and catalytic C-subunits, each with various isoforms. Here, we examine structural and biochemical characteristics of the A-subunit isoforms (Aα and Aβ) and identify different biophysical properties that may promote distinct PP2A functions. Our molecular dynamics simulations and cryo-EM analyses define structural differences in the isoforms that reside primarily at the N-terminus of the A-subunit where it interfaces with regulatory B-subunits. Kinetic analyses show Aβ has a lower binding affinity in complexes with B56 subunits and exhibits unique aggregative properties as a monomeric protein. These findings suggest that the different physicochemical properties between A-subunit isoforms are key to PP2A holoenzyme assembly and function. We predict that the Aβ serves as a reservoir, ensuring that serine-threonine phosphatase activity is maintained during high regulatory demand.

Keywords: A-subunit; Aα; Aβ; PP2A; PPP2R1A; PPP2R1B; cryo-EM; isoform; phosphatase; scaffold.

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Conflict of interest statement

Declaration of interests D.J.T. and G.N. have equity interests in RAPPTA therapeutics. The remaining authors declare no competing interests.

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