Published Erratum
doi: 10.1038/s41592-025-02785-1.
Author Correction: A universal language for finding mass spectrometry data patterns
Tito Damiani #
1
, Alan K Jarmusch #
2
, Allegra T Aron #
3
, Daniel Petras #
4
5
, Vanessa V Phelan #
6
, Haoqi Nina Zhao #
7
, Wout Bittremieux
7
, Deepa D Acharya
8
, Mohammed M A Ahmed
9
10
, Anelize Bauermeister
11
, Matthew J Bertin
12
, Paul D Boudreau
9
, Ricardo M Borges
13
, Benjamin P Bowen
14
15
, Christopher J Brown
16
, Fernanda O Chagas
13
, Kenneth D Clevenger
17
, Mario S P Correia
18
, William J Crandall
19
, Max Crüsemann
20
21
, Eoin Fahy
22
, Oliver Fiehn
23
, Neha Garg
24
, William H Gerwick
7
25
, Jeffrey R Gilbert
16
, Daniel Globisch
18
, Paulo Wender P Gomes
26
, Steffen Heuckeroth
27
, C Andrew James
28
, Scott A Jarmusch
29
, Sarvar A Kakhkhorov
30
, Kyo Bin Kang
31
, Nikolas Kessler
32
, Roland D Kersten
33
, Hyunwoo Kim
34
, Riley D Kirk
35
, Oliver Kohlbacher
36
, Eftychia E Kontou
37
, Ken Liu
19
, Itzel Lizama-Chamu
38
, Gordon T Luu
38
, Tal Luzzatto Knaan
39
, Helena Mannochio-Russo
7
, Michael T Marty
40
, Yuki Matsuzawa
41
, Andrew C McAvoy
42
, Laura-Isobel McCall
43
, Osama G Mohamed
44
45
, Omri Nahor
39
, Heiko Neuweger
32
, Timo H J Niedermeyer
46
, Kozo Nishida
41
, Trent R Northen
14
15
, Kirsten E Overdahl
2
, Johannes Rainer
47
, Raphael Reher
48
, Elys Rodriguez
23
, Timo T Sachsenberg
49
, Laura M Sanchez
38
, Robin Schmid
1
7
, Cole Stevens
50
, Shankar Subramaniam
22
, Zhenyu Tian
51
, Ashootosh Tripathi
33
45
, Hiroshi Tsugawa
41
52
53
, Justin J J van der Hooft
54
55
, Andrea Vicini
47
, Axel Walter
49
, Tilmann Weber
37
, Quanbo Xiong
56
, Tao Xu
57
, Tomáš Pluskal
1
, Pieter C Dorrestein
7
, Mingxun Wang
58
Affiliations
Affiliations
- 1 Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
- 2 Metabolomics Core Facility, Immunity, Inflammation, and Disease Laboratory, Division of Intramural Research, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
- 3 Department of Chemistry and Biochemistry, University of Denver, Denver, CO, USA.
- 4 Functional Metabolomics Lab, CMFI Cluster of Excellence, University of Tuebingen, Tuebingen, Germany.
- 5 Department of Biochemistry, University of California Riverside, Riverside, CA, USA.
- 6 Department of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
- 7 Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
- 8 Biologicals and Natural Products Discovery, Crop Protection R&D, Corteva Agrisciences, Indianapolis, IN, USA.
- 9 BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, USA.
- 10 Pharmacognosy, Faculty of Pharmacy, Al-Azhar University, Nasr City, Egypt.
- 11 Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil.
- 12 Department of Chemistry, Case Western Reserve University, Cleveland, OH, USA.
- 13 Walter Mors Institute of Research on Natural Products, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
- 14 Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, USA.
- 15 The Joint Genome Institute, Lawrence Berkeley National Lab, Berkeley, CA, USA.
- 16 Mass Spectrometry Center of Expertise, Regulatory and Stewardship, Corteva Agrisciences, Indianapolis, IN, USA.
- 17 Biologicals and Natural Products, Crop Protection R&D, Corteva Agrisciences, Indianapolis, IN, USA.
- 18 Department of Chemistry - BMC, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
- 19 Clinical Biomarkers Laboratory, School of Medicine, Emory University, Atlanta, GA, USA.
- 20 Institute of Pharmaceutical Biology, University of Bonn, Bonn, Germany.
- 21 Institute of Pharmaceutical Biology, Goethe University Frankfurt, Frankfurt, Germany.
- 22 Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.
- 23 West Coast Metabolomics Center, University of California Davis, Davis, CA, USA.
- 24 School of Chemistry and Biochemistry, Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, USA.
- 25 Scripps Institution of Oceanography and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
- 26 Faculty of Chemistry, Institute of Exact and Natural Science, Federal University of Para, Belem, Brazil.
- 27 Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany.
- 28 Center for Urban Waters, University of Washington, Tacoma, WA, USA.
- 29 Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark.
- 30 Laboratory of Physical and Chemical Methods of Research, Center for Advanced Technologies, Tashkent, Uzbekistan.
- 31 College of Pharmacy, Sookmyung Women's University, Seoul, Republic of Korea.
- 32 SW R&D Bioinformatics, Life Science Mass Spectrometry, Bruker Daltonics GmbH & Co. KG, Bremen, Germany.
- 33 Department of Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, MI, USA.
- 34 College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University-Seoul, Goyang, Republic of Korea.
- 35 College of Pharmacy, University of Rhode Island, Kingston, RI, USA.
- 36 Applied Bioinformatics, Department of Computer Science, University of Tuebingen, University of Tuebingen; Institute for Bioinformatics and Medical Informatics, University of Tuebingen; Institute for Translational Bioinformatics, University Hospital Tuebingen, Tübingen, Germany.
- 37 The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.
- 38 Department of Chemistry and Biochemistry, UC Santa Cruz, Santa Cruz, CA, USA.
- 39 Department of Marine Biology, The Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.
- 40 Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, USA.
- 41 Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Koganei, Japan.
- 42 School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA.
- 43 Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, USA.
- 44 Pharmacognosy Department, Faculty of Pharmacy, Cairo University, Cairo, Egypt.
- 45 Natural Products Discovery Core, Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
- 46 Institute of Pharmacy, Freie Universität Berlin, Berlin, Germany.
- 47 Institute for Biomedicine, Eurac Research, Bolzano, Italy.
- 48 Department of Pharmacy, University of Marburg, Marburg, Germany.
- 49 Applied Bioinformatics, Department of Computer Science, University of Tuebingen, University of Tuebingen, Tübingen, Germany.
- 50 Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, USA.
- 51 Chemistry and Chemical Biology, Northeastern University, Boston, MA, USA.
- 52 RIKEN Center for Integrative Medical Sciences, Tsurumi-ku, Japan.
- 53 RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Japan.
- 54 Bioinformatics Group, Wageningen University & Research, Wageningen, the Netherlands.
- 55 Department of Biochemistry, University of Johannesburg, Johannesburg, South Africa.
- 56 Crop Protection R&D, Corteva Agrisciences, Indianapolis, IN, USA.
- 57 Data Science and Bioinformatics, Corteva Agrisciences, Dublin, OH, USA.
- 58 Department of Computer Science, University of California Riverside, Riverside, CA, USA. mingxun.wang@cs.ucr.edu.
# Contributed equally.
- PMID: 40781363
- PMCID: PMC12446056
- DOI: 10.1038/s41592-025-02785-1
Item in Clipboard
Published Erratum
Author Correction: A universal language for finding mass spectrometry data patterns
Tito Damiani et al.
Nat Methods.
2025 Sep.
Display options
Format
doi: 10.1038/s41592-025-02785-1.
Authors
Tito Damiani #
1
, Alan K Jarmusch #
2
, Allegra T Aron #
3
, Daniel Petras #
4
5
, Vanessa V Phelan #
6
, Haoqi Nina Zhao #
7
, Wout Bittremieux
7
, Deepa D Acharya
8
, Mohammed M A Ahmed
9
10
, Anelize Bauermeister
11
, Matthew J Bertin
12
, Paul D Boudreau
9
, Ricardo M Borges
13
, Benjamin P Bowen
14
15
, Christopher J Brown
16
, Fernanda O Chagas
13
, Kenneth D Clevenger
17
, Mario S P Correia
18
, William J Crandall
19
, Max Crüsemann
20
21
, Eoin Fahy
22
, Oliver Fiehn
23
, Neha Garg
24
, William H Gerwick
7
25
, Jeffrey R Gilbert
16
, Daniel Globisch
18
, Paulo Wender P Gomes
26
, Steffen Heuckeroth
27
, C Andrew James
28
, Scott A Jarmusch
29
, Sarvar A Kakhkhorov
30
, Kyo Bin Kang
31
, Nikolas Kessler
32
, Roland D Kersten
33
, Hyunwoo Kim
34
, Riley D Kirk
35
, Oliver Kohlbacher
36
, Eftychia E Kontou
37
, Ken Liu
19
, Itzel Lizama-Chamu
38
, Gordon T Luu
38
, Tal Luzzatto Knaan
39
, Helena Mannochio-Russo
7
, Michael T Marty
40
, Yuki Matsuzawa
41
, Andrew C McAvoy
42
, Laura-Isobel McCall
43
, Osama G Mohamed
44
45
, Omri Nahor
39
, Heiko Neuweger
32
, Timo H J Niedermeyer
46
, Kozo Nishida
41
, Trent R Northen
14
15
, Kirsten E Overdahl
2
, Johannes Rainer
47
, Raphael Reher
48
, Elys Rodriguez
23
, Timo T Sachsenberg
49
, Laura M Sanchez
38
, Robin Schmid
1
7
, Cole Stevens
50
, Shankar Subramaniam
22
, Zhenyu Tian
51
, Ashootosh Tripathi
33
45
, Hiroshi Tsugawa
41
52
53
, Justin J J van der Hooft
54
55
, Andrea Vicini
47
, Axel Walter
49
, Tilmann Weber
37
, Quanbo Xiong
56
, Tao Xu
57
, Tomáš Pluskal
1
, Pieter C Dorrestein
7
, Mingxun Wang
58
Affiliations
- 1 Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
- 2 Metabolomics Core Facility, Immunity, Inflammation, and Disease Laboratory, Division of Intramural Research, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.
- 3 Department of Chemistry and Biochemistry, University of Denver, Denver, CO, USA.
- 4 Functional Metabolomics Lab, CMFI Cluster of Excellence, University of Tuebingen, Tuebingen, Germany.
- 5 Department of Biochemistry, University of California Riverside, Riverside, CA, USA.
- 6 Department of Pharmaceutical Sciences, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
- 7 Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
- 8 Biologicals and Natural Products Discovery, Crop Protection R&D, Corteva Agrisciences, Indianapolis, IN, USA.
- 9 BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, USA.
- 10 Pharmacognosy, Faculty of Pharmacy, Al-Azhar University, Nasr City, Egypt.
- 11 Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil.
- 12 Department of Chemistry, Case Western Reserve University, Cleveland, OH, USA.
- 13 Walter Mors Institute of Research on Natural Products, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
- 14 Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Lab, Berkeley, CA, USA.
- 15 The Joint Genome Institute, Lawrence Berkeley National Lab, Berkeley, CA, USA.
- 16 Mass Spectrometry Center of Expertise, Regulatory and Stewardship, Corteva Agrisciences, Indianapolis, IN, USA.
- 17 Biologicals and Natural Products, Crop Protection R&D, Corteva Agrisciences, Indianapolis, IN, USA.
- 18 Department of Chemistry - BMC, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
- 19 Clinical Biomarkers Laboratory, School of Medicine, Emory University, Atlanta, GA, USA.
- 20 Institute of Pharmaceutical Biology, University of Bonn, Bonn, Germany.
- 21 Institute of Pharmaceutical Biology, Goethe University Frankfurt, Frankfurt, Germany.
- 22 Department of Bioengineering, University of California San Diego, La Jolla, CA, USA.
- 23 West Coast Metabolomics Center, University of California Davis, Davis, CA, USA.
- 24 School of Chemistry and Biochemistry, Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, GA, USA.
- 25 Scripps Institution of Oceanography and Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.
- 26 Faculty of Chemistry, Institute of Exact and Natural Science, Federal University of Para, Belem, Brazil.
- 27 Institute of Inorganic and Analytical Chemistry, University of Münster, Münster, Germany.
- 28 Center for Urban Waters, University of Washington, Tacoma, WA, USA.
- 29 Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark.
- 30 Laboratory of Physical and Chemical Methods of Research, Center for Advanced Technologies, Tashkent, Uzbekistan.
- 31 College of Pharmacy, Sookmyung Women's University, Seoul, Republic of Korea.
- 32 SW R&D Bioinformatics, Life Science Mass Spectrometry, Bruker Daltonics GmbH & Co. KG, Bremen, Germany.
- 33 Department of Medicinal Chemistry, College of Pharmacy, University of Michigan, Ann Arbor, MI, USA.
- 34 College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University-Seoul, Goyang, Republic of Korea.
- 35 College of Pharmacy, University of Rhode Island, Kingston, RI, USA.
- 36 Applied Bioinformatics, Department of Computer Science, University of Tuebingen, University of Tuebingen; Institute for Bioinformatics and Medical Informatics, University of Tuebingen; Institute for Translational Bioinformatics, University Hospital Tuebingen, Tübingen, Germany.
- 37 The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kongens Lyngby, Denmark.
- 38 Department of Chemistry and Biochemistry, UC Santa Cruz, Santa Cruz, CA, USA.
- 39 Department of Marine Biology, The Leon H. Charney School of Marine Sciences, University of Haifa, Haifa, Israel.
- 40 Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, USA.
- 41 Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, Koganei, Japan.
- 42 School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA.
- 43 Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, USA.
- 44 Pharmacognosy Department, Faculty of Pharmacy, Cairo University, Cairo, Egypt.
- 45 Natural Products Discovery Core, Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA.
- 46 Institute of Pharmacy, Freie Universität Berlin, Berlin, Germany.
- 47 Institute for Biomedicine, Eurac Research, Bolzano, Italy.
- 48 Department of Pharmacy, University of Marburg, Marburg, Germany.
- 49 Applied Bioinformatics, Department of Computer Science, University of Tuebingen, University of Tuebingen, Tübingen, Germany.
- 50 Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS, USA.
- 51 Chemistry and Chemical Biology, Northeastern University, Boston, MA, USA.
- 52 RIKEN Center for Integrative Medical Sciences, Tsurumi-ku, Japan.
- 53 RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Japan.
- 54 Bioinformatics Group, Wageningen University & Research, Wageningen, the Netherlands.
- 55 Department of Biochemistry, University of Johannesburg, Johannesburg, South Africa.
- 56 Crop Protection R&D, Corteva Agrisciences, Indianapolis, IN, USA.
- 57 Data Science and Bioinformatics, Corteva Agrisciences, Dublin, OH, USA.
- 58 Department of Computer Science, University of California Riverside, Riverside, CA, USA. mingxun.wang@cs.ucr.edu.
# Contributed equally.
- PMID: 40781363
- PMCID: PMC12446056
- DOI: 10.1038/s41592-025-02785-1
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Erratum for
-
A universal language for finding mass spectrometry data patterns.Damiani T, Jarmusch AK, Aron AT, Petras D, Phelan VV, Zhao HN, Bittremieux W, Acharya DD, Ahmed MMA, Bauermeister A, Bertin MJ, Boudreau PD, Borges RM, Bowen BP, Brown CJ, Chagas FO, Clevenger KD, Correia MSP, Crandall WJ, Crüsemann M, Fahy E, Fiehn O, Garg N, Gerwick WH, Gilbert JR, Globisch D, Gomes PWP, Heuckeroth S, James CA, Jarmusch SA, Kakhkhorov SA, Kang KB, Kessler N, Kersten RD, Kim H, Kirk RD, Kohlbacher O, Kontou EE, Liu K, Lizama-Chamu I, Luu GT, Luzzatto Knaan T, Mannochio-Russo H, Marty MT, Matsuzawa Y, McAvoy AC, McCall LI, Mohamed OG, Nahor O, Neuweger H, Niedermeyer THJ, Nishida K, Northen TR, Overdahl KE, Rainer J, Reher R, Rodriguez E, Sachsenberg TT, Sanchez LM, Schmid R, Stevens C, Subramaniam S, Tian Z, Tripathi A, Tsugawa H, van der Hooft JJJ, Vicini A, Walter A, Weber T, Xiong Q, Xu T, Pluskal T, Dorrestein PC, Wang M. Damiani T, et al. Nat Methods. 2025 Jun;22(6):1247-1254. doi: 10.1038/s41592-025-02660-z. Epub 2025 May 12. Nat Methods. 2025. PMID: 40355727 Free PMC article.
