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. 2026 Mar;31(3):1707-1722.
doi: 10.1038/s41380-025-03304-6. Epub 2025 Oct 22.

Structural covariance network topology in individuals at clinical high risk for psychosis: the ENIGMA-CHR Study

Siwei Liu  1   2 Ingrid Agartz  3   4   5   6 Paul Allen  7   8 G Paul Amminger  9   10 Ole A Andreassen  5   11 Peter Bachman  12 Inmaculada Baeza  13   14   15   16 Helen Baldwin  17   18   19 Cali F Bartholomeusz  9   10 Stefan Borgwardt  20   21 Sabrina Catalano  22 Xiaogang Chen  23   24 Kang Ik K Cho  25 Sunah Choi  26 Tiziano Colibazzi  27   28 Rebecca E Cooper  12   29 Cheryl M Corcoran  30   31 Vanessa L Cropley  9   10 Lieuwe de Haan  32   33 Camilo de la Fuente-Sandoval  34 Montserrat Dolz  13   35   36 Bjørn H Ebdrup  37   38 Adriana Fortea  13   16   39 Paolo Fusar-Poli  40   41   42   43 Louise Birkedal Glenthøj  44 Birte Yding Glenthøj  37   38 Shalaila S Haas  30 Holly K Hamilton  45   46   47 Kristen M Haut  48 Rebecca A Hayes  12 Ying He  23 Karsten Heekeren  49   50 Wenche Ten Velden Hegelstad  51   52 Christine I Hooker  48 Leslie E Horton  22 Daniela Hubl  53 Wu Jeong Hwang  54 Michael Kaess  55   56 Kiyoto Kasai  57   58   59 Naoyuki Katagiri  60 Minah Kim  61   62 Jochen Kindler  56 Mallory J Klaunig  63 Shinsuke Koike  58   64 Tina D Kristensen  37 Yoo Bin Kwak  26 Jun Soo Kwon  26   61   62 Stephen M Lawrie  65 Irina Lebedeva  66 Imke Lj Lemmers-Jansen  17   67 Pablo León-Ortiz  34 Ashleigh Lin  68 Rachel L Loewy  46 Xiaoqian Ma  23 Daniel H Mathalon  46   69 Patrick McGorry  9   10 Philip McGuire  70 Chantal Michel  56 Romina Mizrahi  71   72 Masafumi Mizuno  73 Paul Møller  74 Ricardo Mora-Durán  75 Daniel Muñoz-Samons  35   36 Barnaby Nelson  9   10 Takahiro Nemoto  76 Merete Nordentoft  77 Dorte Nordholm  77 Maria A Omelchenko  78 Lijun Ouyang  23   24   79 Christos Pantelis  80   81   82 Jose C Pariente  83 Jayachandra M Raghava  37   84 Paul E Rasser  85   86 Franz Resch  87 Francisco Reyes-Madrigal  34 Luis F Rivera-Chávez  34 Jan I Røssberg  6 Wulf Rössler  50   88 Dean F Salisbury  22 Daiki Sasabayashi  89   90 Ulrich Schall  85   91 Jason Schiffman  92 Andre Schmidt  20 Lukasz Smigielski  50   93 Mikkel E Sørensen  37 Gisela Sugranyes  13   14   15   16 Michio Suzuki  89   90 Tsutomu Takahashi  89   90 Christian K Tamnes  94   95 Jinsong Tang  96   97 Anastasia Theodoridou  50 Sophia I Thomopoulos  98 Alexander S Tomyshev  66 Jordina Tor  35   36 Peter J Uhlhaas  99   100 Tor G Værnes  6   101 Therese Amj van Amelsvoort  102 Dennis Velakoulis  103   104 Esther Via  35   36 Sophia Vinogradov  45 James A Waltz  105 Christina Wenneberg  77 Lars T Westlye  5   6   106 Stephen J Wood  9   10   107 Hidenori Yamasue  108 Liu Yuan  23   24   79 Alison R Yung  109   110 Michael Wl Chee  1   2 Paul M Thompson  98 Dennis Hernaus  102 Maria Jalbrzikowski  12   29 Jimmy Lee  111   112 Juan H Zhou  113   114   115 ENIGMA Clinical High Risk for Psychosis Working Group
Collaborators, Affiliations

Structural covariance network topology in individuals at clinical high risk for psychosis: the ENIGMA-CHR Study

Siwei Liu et al. Mol Psychiatry. 2026 Mar.

Abstract

Brain network architecture is anticipated to influence future grey matter loss in individuals at Clinical High Risk (CHR) for psychosis. However, existing studies on grey matter structural network properties in CHR are scarce and constrained by small sample sizes. Here, we examined network topology differences comparing a) CHR versus healthy controls (HC); b) CHR who transitioned to psychosis (CHR-T) versus those who did not (CHR-NT); and c) different subsyndromes. We included structural scans from 1842 CHR individuals and 1417 HC individuals from 31 sites within the Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) consortium. At the global level, CHR individuals exhibited lower structural covariance (q < 0.001; Cohen's d = 0.164) and less optimal structural network configuration than HC (lower global efficiency and clustering coefficient, d = 0.100,0.087, qs <= 0.027). Though no global difference between CHR-T and CHR-NT, network distinctiveness of the frontal and temporal surface area networks was higher in CHR-T than CHR-NT (d = 0.223,0.237) and HC (d = 0.208,0.219) (qs < 0.001). Network distinctiveness of the frontal cortical thickness network was lower in CHR-T (d = 0.218, q < 0.001) than CHR-NT and HC (d = 0.165, q < 0.001). Importantly, higher network distinctiveness was associated with worse positive symptoms in CHR-NT (frontal surface area, q = 0.008, R2 = 0.013) and at trend with worse negative symptoms in CHR-T (frontal thickness, q = 0.063, R2 = 0.049). Further, the brief intermittent psychotic syndrome subgroup showed more severe network alterations. Together, brain structural networks inform symptoms and the risk of transition to psychosis in CHR individuals.

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Conflict of interest statement

Competing interests: Professor Ingrid Agartz has received lecturer honoraria from Lundbeck. Professor Ole A Andreassen has received personal fees from Lundbeck and Sunovion and has served as a consultant for Cortechs.ai. Dr Inmaculada Baeza has received personal fees from Angelini Pharma, Janssen Pharmaceuticals, and Otsuka-Lundbeck. Professor Bjørn H. Ebdrup is part of the Advisory Board of Boehringer Ingelheim, Lundbeck Pharma, and Orion Pharma; and has received lecture fees from Boehringer Ingelheim, Otsuka Pharma Scandinavia AB, and Lundbeck Pharma. Professor Paolo Fusar-Poli received grants from Lundbeck; personal fees from Angelini Pharma and Menarini Group; and nonfinancial support from Boehringer Ingelheim. Professor Birte Yding Glenthøj has been the leader of a Lundbeck Foundation Centre of Excellence for Clinical Intervention and Neuropsychiatric Schizophrenia Research (CINS) (January 2009 – December 2021), which was partially financed by an independent grant from the Lundbeck Foundation based on international review and partially financed by the Mental Health Services in the Capital Region of Denmark, the University of Copenhagen, and other foundations. All grants are the property of the Mental Health Services in the Capital Region of Denmark and administrated by them. Dr Louise Birkedal Glenthøj has received support from the TrygFoundation; the Danish Research Council on Independent Research; the Lundbeck Foundation Center for Clinical Intervention and Neuropsychiatric Schizophrenia Research, CINS. Professor Kiyoto Kasai has received grants from Novartis, Astellas, Merck Sharp and Dohme, Eli Lily and Company, Dainippon-Sumitomo Corporation, Eisai, Otsuka, Shionogi, Ono, Tanabe-Mitsubishi, and Takeda; personal fees from Otsuka, Fuji-Film, Yoshitomi, Kyowa, Janssen Pharmaceuticals, Astellas, Meiji Seika Pharma, Sumitomo Dainippon Pharma, and Takeda; and serves on the funding committees of Takeda Science Foundation and Astellas. Dr Shinsuke Koike has received grants from Agency for Medical Research and Development, Japan Society for the Promotion of Science, the Naito Foundation, and Takeda Science Foundation. Professor Daniel H Mathalon has served as a consultant to Boehringer Ingelheim and Neurocrine. Professor Takahiro Nemoto has received personal fees from Astellas, Eisai, Janssen Pharmaceuticals, Meiji Seika Pharma, Sumitomo Dainippon Pharma, and Takeda. Professor Christos Pantelis has received honoraria for talks at educational meetings and has served on an advisory board for Lundbeck, Australia Pty Ltd.. Dr Francisco Reyes-Madrigal has received speaker fees from Janssen (Johnson & Johnson). Professor Wulf Rössler is supported by the Zurich Program for Sustainable Development of Mental Health Services (ZInEP). The donor had no further role in the experimental design, collection, analysis, interpretation of data, writing, and submitting this article for publication. Professor Michio Suzuki had received personal fees from Nakagawa Hospital. Professor Peter J Uhlhaas has received grants from Lundbeck and Eli Lilly UK. Professor Paul M Thompson receives partial research support from Biogen, Inc., for research unrelated to this manuscript. Dr Jimmy Lee has received grants from the Singapore Ministry of Health’s National Medical Research Council; honoraria from Otsuka Pharmaceuticals, Sumitomo Pharmaceuticals, Lundbeck Singapore and Janssen Pharmaceuticals. Other authors have no conflict of interest to declare that are relevant to the content of this article. Ethics approval and consent to participate: All methods were performed in accordance with the relevant guidelines and regulations. All 31 sites obtained local institutional review board approval. The Institutional Review Board (IRB) at the Boston Children’s Hospital also approved the ENIGMA-CHR Repository (IRB-P00043549). Written informed consent was obtained from every participant, or from the participant’s guardian for minors. All studies were conducted in accordance with the Declaration of Helsinki [119].

Figures

Fig. 1
Fig. 1. Construction of structural covariance network.
In line with previous work [44], we constructed the structural covariance matrix using cortical thickness, cortical surface area and subcortical volume. For each participant, the cortical thickness and cortical surface area estimates from 34 ROIs [42], and the volumes of 8 subcortical regions, from each hemisphere represented 76 nodes in the covariance matrix after averaging across hemispheres, covariate regression, z-score transformation and covariation calculation based on z-score differences. A high value in the covariance matrix suggests that two nodes differed similarly from the controls (i.e growing or shrinking together). One covariance matrix was obtained for each participant, representing the individualised pattern of covarying brain morphology. ROI region of interest; CHR clinical high risk; L left; R right; Mc mean of the control group; SDc standard deviation of the control group.
Fig. 2
Fig. 2. A less efficient network configuration in CHR.
A mean structural covariance matrix for healthy controls (left) and CHR individuals (right). Rows and columns follow the same order of 76 nodes (top to bottom and left to right). The colours indicate the covariance strength, with the lowest in blue and the highest in red. The white gridlines separate CT, SA and volume nodes. CHR individuals exhibited lower structural covariance than controls. B Bar charts (with standard errors) indicating lower global efficiency, local efficiency, and clustering coefficient in CHR individuals. CHR clinical high risk; CT cortical thickness; SA cortical surface area; Vol subcortical volume.
Fig. 3
Fig. 3. Network distinctiveness was higher in frontal and temporal SA communities and lower in a frontal CT community in CHR-T versus CHR-NT.
A Nine identified communities (colours) projected to surface (cortical regions) or structural image (subcortical regions). Among others, SA and CT of occipital and sensorimotor areas, and subcortical brain volumes, were grouped together into the same communities. Separate SA and CT communities were identified for temporal and frontal regions. B Bar charts (with standard errors) visualizing higher frontal and temporal SA system segregation index, and lower frontal CT community segregation index in CHR-T versus CHR-NT (FDR-corrected across 9 communities). Horizontal bar with * indicates significant group difference after FDR correction (q < 0.05). C mean structural covariance matrix for healthy controls (left), CHR-NT (middle) and CHR-T individuals (right). Rows and columns were grouped according to the 9 communities. The colour bars on the left and the bottom of each matrix and the colour boxes along the diagonal of each matrix indicate the community following the same colour scheme in Fig. 3A. Within each matrix, the colours indicate the covariance strength, with the lowest in blue and the highest in red. CHR-T individuals at clinical high risk for psychosis who transited to psychosis later in the follow-up; CHR-NT individuals at clinical high risk for psychosis who did not transit to psychosis later in the follow-up; CT cortical thickness; SA cortical surface area; q FDR corrected p value; FDR false discovery rate.
Fig. 4
Fig. 4. Association between network distinctiveness and clinical symptoms.
Residuals, after removing the effects of age, sex and random intercepts of site from the clinical scores estimated using the LMM method, were plotted against the system segregation index of the frontal communities. Each dot represents one participant. The lines indicate the fitted association. The beta and p values were estimated using the LMM method before FDR correction. Upper panel: Higher frontal SA community system segregation index was associated with higher SOPS positive symptom score in CHR-NT (q = 0.008). CHR-T was higher in frontal SA system segregation index and SOPS positive symptom score than CHR-NT. Lower panel: The lower frontal CT community was associated with higher SOPS negative symptom scores in CHR-T (uncorrected p = 0.016, q = 0.063). CHR-T was lower in the frontal CT community system segregation index and higher in SOPS negative symptom scores than CHR-NT. CHR-T individuals at clinical high risk for psychosis who transited to psychosis later in the follow-up; CHR-NT individuals at clinical high risk for psychosis who did not transit to psychosis later in the follow-up; SA cortical surface area; CT cortical thickness; SOPS Scale of Psychosis-risk Symptoms; LMM linear mixed modelling; q FDR corrected p value; FDR false discovery rate; * significant at both uncorrected p < 0.05 and corrected p < 0.05; + significant at uncorrected p < 0.05 but did not survive multiple comparison corrections.
Fig. 5
Fig. 5. Schematic representations of network breakdown stages.
A Schematic representations of deficits spreading from stage 1 to 3 of network breakdown. Circles represent nodes in the network. Lines connecting the circles are edges in the network. Two networks are depicted where deficits (orange circle) spread from one network (left) to the other (right). Orange lines indicate the path of spreading from the initial deficit node in stage 1, followed by the spreading to four additional nodes within the network (left) in stage 2, and eventually affecting node of the other network (right) in stage 3. B Within (upper panel) and between (lower panel) network covariance of the frontal CT network. We interpreted the lower frontal CT network distinctiveness in CHR-T than CHR-NT to reflect stage 1 of the frontal CT’s network breakdown, which is driven by the lower within-network covariance (upper panel). C Within (upper panel) and between (lower panel) network covariance of the frontal SA network. We interpreted the higher frontal SA network distinctiveness in CHR-T than CHR-NT to reflect stage 2 of the frontal SA’s network breakdown, which is driven by the higher within-network covariance (upper panel). In B and C, lower between-network covariance in CHR-NT than controls may reflect the lower mean structural covariance in CHR than controls. Horizontal bars indicate significant group differences (q < 0.05). D Schematic representations of within (upper panel) and between (lower panel) network covariance changes across network breakdown stages. We expect that the stage 1 and 2 of network breakdown are dominated by within-network covariance changes. The between-network covariance increase in stage 3 due to deficit spreading across communities. E A schematic summary of the network breakdown stages. * based on the literature [22]. CHR-T individuals at clinical high risk for psychosis who transited to psychosis later in the follow-up; CHR-NT individuals at clinical high risk for psychosis who did not transit to psychosis later in the follow-up; CT cortical thickness; SA cortical surface area; q FDR corrected p value; FDR false discovery rate.

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