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. 2025 Nov 20;10(1):73.
doi: 10.1038/s41525-025-00529-w.

Genome-wide association study of 398,238 women unveils seven loci associated with high-grade serous ovarian cancer

Daniel R Barnes #  1 Jonathan P Tyrer #  2 Joe Dennis  2 Goska Leslie  2 Manjeet K Bolla  2 Michael Lush  2 Amber M Aeilts  3 Kristiina Aittomäki  4 Nadine Andrieu  5   6   7   8 Irene L Andrulis  9   10 Hoda Anton-Culver  11 Adalgeir Arason  12   13 Banu K Arun  14 Judith Balmaña  15   16 Elisa V Bandera  17 Rosa B Barkardottir  12   13 Lieke P V Berger  18 Amy Berrington de Gonzalez  19 Pascaline Berthet  20   21 Katarzyna Białkowska  22 Line Bjørge  23   24 Amie M Blanco  25 Marinus J Blok  26 Kristie A Bobolis  27 Natalia V Bogdanova  28   29   30 James D Brenton  31 Henriett Butz  32   33   34 Saundra S Buys  35 Maria A Caligo  36 Ian Campbell  37 Carmen Castillo  38 Kathleen B M Claes  39   40   41 Sarah V Colonna  42 Linda S Cook  43 Mary B Daly  44 Agnieszka Dansonka-Mieszkowska  45 Miguel de la Hoya  46 Anna deFazio  47   48   49   50 Allison DePersia  51   52 Yuan Chun Ding  53 Jennifer A Doherty  54 Susan M Domchek  55 Thilo Dörk  29 Zakaria Einbeigi  56 Christoph Engel  57 D Gareth Evans  58   59 Lenka Foretova  60 Renée T Fortner  61   62 Florentia Fostira  63 Maria Cristina Foti  64 Eitan Friedman  65   66   67 Megan N Frone  68 Patricia A Ganz  69 Aleksandra Gentry-Maharaj  70   71 Gord Glendon  10 Andrew K Godwin  72 Anna González-Neira  73   74 Mark H Greene  68 Jacek Gronwald  22 Aliana Guerrieri-Gonzaga  75 Ute Hamann  76 Thomas V O Hansen  77   78 Holly R Harris  79   80 Jan Hauke  81   82 Florian Heitz  83 Frans B L Hogervorst  84 Maartje J Hooning  85 John L Hopper  86 Chad D Huff  87 David G Huntsman  88   89   90   91 Evgeny N Imyanitov  92 Louise Izatt  93 Anna Jakubowska  22   94 Paul A James  95   96 Ramunas Janavicius  97   98   99 Esther M John  100   101   102 Siddhartha Kar  103 Beth Y Karlan  104   105 Catherine J Kennedy  47   48   49 Lambertus A L M Kiemeney  106 Irene Konstantopoulou  63 Jolanta Kupryjanczyk  45 Yael Laitman  66 Ofer Lavie  107   108 Kate Lawrenson  109 Jenny Lester  104   105 Fabienne Lesueur  5   6   7   8 Carlos Lopez-Pleguezuelos  110   111   112 Phuong L Mai  113 Siranoush Manoukian  114 Taymaa May  115 Iain A McNeish  116   117 Usha Menon  70 Roger L Milne  86   118   119 Francesmary Modugno  120   121 Jennifer M Mongiovi  122   123 Marco Montagna  64 Kirsten B Moysich  124 Susan L Neuhausen  53 Finn C Nielsen  125 Catherine Noguès  126   127 Edit Oláh  32 Olufunmilayo I Olopade  128 Ana Osorio  74   129 Laura Papi  130 Harsh Pathak  72 Celeste L Pearce  131   132 Inge S Pedersen  133   134   135 Ana Peixoto  136   137 Tanja Pejovic  138   139 Pei-Chen Peng  140 Beth N Peshkin  141   142 Paolo Peterlongo  143 C Bethan Powell  25 Darya Prokofyeva  144 Miquel Angel Pujana  145   146 Paolo Radice  147 Muhammad U Rashid  76   148 Gad Rennert  107   149 George Richenberg  150 Dale P Sandler  151 Naoko Sasamoto  122   152 Veronica W Setiawan  153 Priyanka Sharma  154 Weiva Sieh  87   155   156 Christian F Singer  157 Katie Snape  158 Anna P Sokolenko  92 Penny Soucy  159 Melissa C Southey  119   160   161 Dominique Stoppa-Lyonnet  162   163   164 Rebecca Sutphen  165 Christian Sutter  166 Yen Y Tan  157 Manuel R Teixeira  136   137   167 Kathryn L Terry  123   168 Liv Cecilie V Thomsen  23   24   169 Marc Tischkowitz  170 Amanda E Toland  3   171 Toon Van Gorp  172   173 Ana Vega  110   111   174 Digna R Velez Edwards  175 Penelope M Webb  176 Jeffrey N Weitzel  177 Nicolas Wentzensen  178 Alice S Whittemore  100   179 Stacey J Winham  180 Anna H Wu  181 Siddhartha Yadav  182 Yao Yu  87 Argyrios Ziogas  11 Andrew Berchuck  183 Fergus J Couch  184 Ellen L Goode  180 Marc T Goodman  185 Alvaro N Monteiro  186 Kenneth Offit  187   188   189 Susan J Ramus  190   191 Harvey A Risch  192 Joellen M Schildkraut  193 Mads Thomassen  194   195 Jacques Simard  159   196 Douglas F Easton  2   103 Michelle R Jones  197 Georgia Chenevix-Trench  198 Simon A Gayther  197 Antonis C Antoniou  2 Paul D P Pharoah  140
Affiliations

Genome-wide association study of 398,238 women unveils seven loci associated with high-grade serous ovarian cancer

Daniel R Barnes et al. NPJ Genom Med. .

Abstract

Nineteen genomic regions have been associated with high-grade serous ovarian cancer (HGSOC). We meta-analyzed >22 million variants for 398,238 women from the Ovarian Cancer Association Consortium (OCAC), UK Biobank (UKBB) and Consortium of Investigators of Modifiers of BRCA1/BRCA2 (CIMBA) to identify novel HGSOC susceptibility loci. Eight novel variants were associated with HGSOC risk. An interesting discovery biologically was TP53 3'-UTR SNP rs78378222-T's association with HGSOC (per-T-allele relative risk (RR) = 1.44, 95% CI:1.28-1.62, P = 1.76 × 10-9). Polygenic scores (PGS) were developed using OCAC and CIMBA data and trained on FinnGen data. The optimal PGS included 64,518 variants and was associated with an odds ratio of 1.46 (95% CI:1.37-1.54) per standard deviation when validated in the UKBB. This study represents the largest HGSOC GWAS to date - demonstrating that improvements in imputation reference panels and increased sample sizes help to identify HGSOC associated variants that previously went undetected, ultimately improving PGS which can improve personalized HGSOC risk prediction.

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Conflict of interest statement

Competing interests: L.B. has received honoraria for lectures from GlaxoSmithKline, Merck Sharp and Dohme, has received a research grant from AstraZeneca for a researcher-initiated trial, and has had leadership roles in Onkologisk Forum between 2018 and 2022 and in the Nordic Society of Gynaecological Oncology (NSGO) and NSGO-Clinical Trial Unit since 2021. She is faculty member the Gynaecological Cancers group, European Society of Medical Oncology (ESMO) external expert in gynecologic oncology for the Norwegian National Expert Panel for Persons with Serious Life-Shortening Diseases and Member of the national specialist group in oncology, Sykehusinnkjøp HF as well as board member for KinN Therapeutics Bergen - a biopharmaceutical company focused on tailored preclinical oncology services for the development of novel anticancer compounds. A.d. has received research support from AstraZeneca and Illumina, and speakers fee from AstraZeneca. A.G.-M. has received research funding for my role, has been funded by grants from the Medical Research Council (MRC), Cancer Research UK (CRUK), National Institute for Health Research (NIHR) and The Eve Appeal, has funded research collaborations with industry - iLOF (intelligent Lab on Fiber), RNA Guardian, Micronoma and Mercy BioAnalytics, has research collaborations with academic institutions: University of Cambridge, QIMR Berghofer Medical Research Institute, Imperial College London, University of Innsbruck and Dana Farber USA, is a Co-Director Research Domain Trials, and has consultancy arrangement with Mercy BioAnalytics. F.H. has received personal fees and is on advisory boards of NovoCure, PharmaMar, AstraZeneca, Roche, Tesaro, GSK, Zailabs, Abbvie, MSD. A.E.T. has received grant funding through the National Institutes of Health and has study section membership for the National Institutes of Health. P.M.W. has received grant funding from AstraZeneca (06/2017-03/2021) for an unrelated study of ovarian cancer. D.F.E. and A.C.A. are listed as creators of the BOADICEA model which has been licensed by Cambridge Enterprise (University of Cambridge) for commercial purposes.

Figures

Fig. 1
Fig. 1. Manhattan plot showing the associations with HGSOC from the meta-analysis of OCAC, UKBB and CIMBA summary association data.
The dashed line is the genome-wide statistical significance level (P = 5 × 10−8). The eight independent genome-wide statistically significant variants at seven novel loci are shown as red triangles.
Fig. 2
Fig. 2. Predicted cumulative risks of developing EOC by PGS percentiles.
Predicted cumulative risks of developing EOC based on the PGS64518 at various percentiles of the PGS distribution for: a the general population (0.7% for 1st percentile to 3.9% for the 99th percentile), b BRCA1 PV carriers (20.7% for 1st percentile to 74.1% for the 99th percentile), and c BRCA2 PV carriers (7.3% for 1st percentile to 35.7% for the 99th percentile).
Fig. 3
Fig. 3
Schema describing the analytical process for the GWAS analyses from OCAC, UKBB and CIMBA, and subsequent meta-analyses.
Fig. 4
Fig. 4. Schema describing the development of polygenic models, determining the optimal model, and validating the resultant polygenic score in European ancestry women from UKBB and East Asian ancestry women from BBJ.
S4 select and shrink using summary statistics, PGM polygenic model, NMOC non-mucinous ovarian cancer, LD linkage disequilibrium.

Update of

  • Large-scale genome-wide association study of 398,238 women unveils seven novel loci associated with high-grade serous epithelial ovarian cancer risk.
    Barnes DR, Tyrer JP, Dennis J, Leslie G, Bolla MK, Lush M, Aeilts AM, Aittomäki K, Andrieu N, Andrulis IL, Anton-Culver H, Arason A, Arun BK, Balmaña J, Bandera EV, Barkardottir RB, Berger LPV, de Gonzalez AB, Berthet P, Białkowska K, Bjørge L, Blanco AM, Blok MJ, Bobolis KA, Bogdanova NV, Brenton JD, Butz H, Buys SS, Caligo MA, Campbell I, Castillo C, Claes KBM; GEMO Study Collaborators; EMBRACE Collaborators; Colonna SV, Cook LS, Daly MB, Dansonka-Mieszkowska A, de la Hoya M, deFazio A, DePersia A, Ding YC, Domchek SM, Dörk T, Einbeigi Z, Engel C, Evans DG, Foretova L, Fortner RT, Fostira F, Foti MC, Friedman E, Frone MN, Ganz PA, Gentry-Maharaj A, Glendon G, Godwin AK, González-Neira A, Greene MH, Gronwald J, Guerrieri-Gonzaga A, Hamann U, Hansen TVO, Harris HR, Hauke J, Heitz F, Hogervorst FBL, Hooning MJ, Hopper JL, Huff CD, Huntsman DG, Imyanitov EN; kConFab Investigators; Izatt L, Jakubowska A, James PA, Janavicius R, John EM, Kar S, Karlan BY, Kennedy CJ, Kiemeney LALM, Konstantopoulou I, Kupryjanczyk J, Laitman Y, Lavie O, Lawrenson K, Lester J, Lesueur F, Lopez-Pleguezuelos C, Mai PL, Manoukian S, May T, McNeish IA, Menon U, Milne RL, Modugno F, Mongiovi JM, Montagna M, … See abstract for full author list ➔ Barnes DR, et al. medRxiv [Preprint]. 2024 Mar 4:2024.02.29.24303243. doi: 10.1101/2024.02.29.24303243. medRxiv. 2024. Update in: NPJ Genom Med. 2025 Nov 20;10(1):73. doi: 10.1038/s41525-025-00529-w. PMID: 38496424 Free PMC article. Updated. Preprint.

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