Effect of a molecular dipole on the ionic strength dependence of a biomolecular rate constant. Identification of the site of reaction

Abstract

A theory is proposed for determining the location of a reaction site on a protein of known tertiary structure with an asymmetric charge distribution by an analysis of the effect of ionic strength on the rate of reaction of the protein with a small ion, using equations of Brønsted (J. N. Brønsted, 1922, Z. Phys, Chem. 102:169-207), Debye and Hückel (P. Debye and E. Hückel, 1923, Phys. Z. 24:185-206), and Kirkwood (J. G. Kirkwood, 1934, J. Chem. Phys. 2:351-361). The theory is based on the fact that the dipole moment of the transition complex differs from that of the protein, which will be reflected in the ionic strength dependence of the reaction. The location of the small ion with respect to the dipole axis of the protein can be calculated from this difference. For protein-protein reactions, an a priori assumption has to be made about the orientation of one of the reaction partners, since many different orientations of the reactants with respect to each other result in dipole moments of the same magnitude.