Comparative Study
doi: 10.1002/j.1460-2075.1995.tb07169.x.
Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides
Affiliations
- PMID: 7737131
- PMCID: PMC398274
- DOI: 10.1002/j.1460-2075.1995.tb07169.x
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Comparative Study
Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides
EMBO J.
.
Abstract
Structural parameters characterizing the bending propensity of trinucleotides were deduced from DNase I digestion data using simple probabilistic models. In contrast to dinucleotide-based models of DNA bending and/or bendability, the trinucleotide parameters are in good agreement with X-ray crystallographic data on bent DNA. This improvement may be due to the fact that the trinucleotide model incorporates more sequence context information than do dinucleotide-based descriptions.
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