Database on the structure of small ribosomal subunit RNA
- PMID: 8594609
- PMCID: PMC145606
- DOI: 10.1093/nar/24.1.86
Database on the structure of small ribosomal subunit RNA
Abstract
The Antwerp database on small ribosomal subunit RNA offers over 4300 nucleotide sequences (August 1995). All these sequences are stored in the form of an alignment based on the adopted secondary structure model, which in turn is corroborated by the observation of compensating substitutions in the alignment. Besides the primary and secondary structure information, literature references, accession numbers and detailed taxonomic information are also compiled. The complete database is made available to the scientific community through anonymous ftp and World Wide Web(WWW).
Similar articles
-
Database on the structure of small ribosomal subunit RNA.Nucleic Acids Res. 1997 Jan 1;25(1):111-6. doi: 10.1093/nar/25.1.111. Nucleic Acids Res. 1997. PMID: 9016516 Free PMC article.
-
Database on the structure of small ribosomal subunit RNA.Nucleic Acids Res. 1994 Sep;22(17):3488-94. doi: 10.1093/nar/22.17.3488. Nucleic Acids Res. 1994. PMID: 7524022 Free PMC article.
-
Database on the structure of small ribosomal subunit RNA.Nucleic Acids Res. 1998 Jan 1;26(1):179-82. Nucleic Acids Res. 1998. PMID: 9399829 Free PMC article.
-
Compilation of small ribosomal subunit RNA sequences.Nucleic Acids Res. 1991 Apr 25;19 Suppl(Suppl):1987-2015. doi: 10.1093/nar/19.suppl.1987. Nucleic Acids Res. 1991. PMID: 2041797 Free PMC article. Review. No abstract available.
-
Protein recognition of a ribosomal RNA tertiary structure.Nucleic Acids Symp Ser. 1995;(33):5-7. Nucleic Acids Symp Ser. 1995. PMID: 8643396 Review.
Cited by
-
Detection of Verrucomicrobia in a pasture soil by PCR-mediated amplification of 16S rRNA genes.Appl Environ Microbiol. 1999 Sep;65(9):4280-4. doi: 10.1128/AEM.65.9.4280-4284.1999. Appl Environ Microbiol. 1999. PMID: 10473454 Free PMC article.
-
Isolation and characterization of isopimaric acid-degrading bacteria from a sequencing batch reactor.Appl Environ Microbiol. 1996 Sep;62(9):3146-51. doi: 10.1128/aem.62.9.3146-3151.1996. Appl Environ Microbiol. 1996. PMID: 8795202 Free PMC article.
-
Database on the structure of small ribosomal subunit RNA.Nucleic Acids Res. 1997 Jan 1;25(1):111-6. doi: 10.1093/nar/25.1.111. Nucleic Acids Res. 1997. PMID: 9016516 Free PMC article.
-
High-affinity methane oxidation by a soil enrichment culture containing a type II methanotroph.Appl Environ Microbiol. 1999 Mar;65(3):1009-14. doi: 10.1128/AEM.65.3.1009-1014.1999. Appl Environ Microbiol. 1999. PMID: 10049856 Free PMC article.
-
Novel molecular method for identification of Streptococcus pneumoniae applicable to clinical microbiology and 16S rRNA sequence-based microbiome studies.J Clin Microbiol. 2012 Jun;50(6):1968-73. doi: 10.1128/JCM.00365-12. Epub 2012 Mar 21. J Clin Microbiol. 2012. PMID: 22442329 Free PMC article.
References
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources