Evidence for a model ancestral viroid
- PMID: 8643352
Evidence for a model ancestral viroid
Abstract
The generation of a phylogenetic tree of viroids and viroid-like plant satellite RNAs via computer analysis, coupled with several conspicuous biochemical characteristics of the rolling circle replication of these RNAs -including both self-cleavage and self-ligation- leads us to propose the peach latent mosaic viroid (PLMVd) as a current "living fossil" dating from a precellular world. Incorporated within this proposal is a revised mechanism of PLMVd rolling circle replication which requires a minimal protein involvement.
Similar articles
-
Peach latent mosaic viroid is locked by a 2',5'-phosphodiester bond produced by in vitro self-ligation.J Mol Biol. 1997 Oct 31;273(3):533-43. doi: 10.1006/jmbi.1997.1355. J Mol Biol. 1997. PMID: 9356244
-
Intra- and intermolecular nonenzymatic ligations occur within transcripts derived from the peach latent mosaic viroid.Virology. 1995 Oct 1;212(2):705-9. doi: 10.1006/viro.1995.1528. Virology. 1995. PMID: 7571440
-
The peach latent mosaic viroid replication initiation site is located at a universal position that appears to be defined by a conserved sequence.Virology. 2008 Apr 10;373(2):362-75. doi: 10.1016/j.virol.2007.12.010. Epub 2008 Jan 10. Virology. 2008. PMID: 18190946
-
Rolling-circle replication of viroids, viroid-like satellite RNAs and hepatitis delta virus: variations on a theme.RNA Biol. 2011 Mar-Apr;8(2):200-6. doi: 10.4161/rna.8.2.14238. Epub 2011 Mar 1. RNA Biol. 2011. PMID: 21358283 Review.
-
Virus-associated small satellite RNAs and viroids display similarities in their replication strategies.Virology. 2015 May;479-480:627-36. doi: 10.1016/j.virol.2015.02.018. Epub 2015 Feb 27. Virology. 2015. PMID: 25731957 Review.
Cited by
-
Stem-Loop RNA Hairpins in Giant Viruses: Invading rRNA-Like Repeats and a Template Free RNA.Front Microbiol. 2018 Feb 1;9:101. doi: 10.3389/fmicb.2018.00101. eCollection 2018. Front Microbiol. 2018. PMID: 29449833 Free PMC article.
-
Circular RNAs with hammerhead ribozymes encoded in eukaryotic genomes: The enemy at home.RNA Biol. 2017 Aug 3;14(8):985-991. doi: 10.1080/15476286.2017.1321730. Epub 2017 Apr 27. RNA Biol. 2017. PMID: 28448743 Free PMC article.
-
A new structural motif in the left terminal domain of large viroids identified by covariation analysis.Virus Genes. 2003 Jan;26(1):19-23. doi: 10.1023/a:1022369803448. Virus Genes. 2003. PMID: 12680689