beta-Site covalent reactions trigger transitions between open and closed conformations of the tryptophan synthase bienzyme complex
- PMID: 8664293
- DOI: 10.1021/bi960033k
beta-Site covalent reactions trigger transitions between open and closed conformations of the tryptophan synthase bienzyme complex
Abstract
The tryptophan synthase bienzyme complex (alpha2beta2) from Salmonella tryphimurium catalyzes the final steps in the biosynthesis of L-Trp. To investigate the roles played by conformational change in tryptopthan synthase catalysis, the fluorophore 8-anilino-1-naphthalensulfonate (ANS) is used to identify conformational states. The binding of ANS to the alpha2beta2 bienzyme complex is accompanied by a dramatic enhancement of ANS fluorescence and a shift of the emission maximum from 520 to 482 nm. The ANS binding isotherm is biphasic and consists of a class of moderately high-affinity, noninteracting sites with a stoichiometry of 1 site/alpha beta dimeric unit (Kd' = 62 + or - 15 micrometer) and a much weaker set of non-specific interactions with K'd>1mM. Our findings show that the affinity of the enzyme for ANS is strongly decreased (> 10-fold) by interactions at two loci 30 angstroms apart: (i) the binding of the alpha-site ligands, 3-indole-D-glycerol 3'-phosphate or alpha-glycerol phosphate (GP) or (ii) reaction at the beta-subunit to form either the alpha-aminoacrylate Schiff base, E(A-A), or quinonoid species, E(Q). In contrast, formation of the L-Ser and L-Trp external aldimines E(Aex1) and E(Aex2) at the beta-site causes a 2-3 fold decrease in the affinity of the enzyme for ANS. The combination of E(A-A)or E(Q) with GP brings about almost complete displacement of ANS, indicating that these interactions drive a conformation change in alphabeta subunit pairs which prevents the binding of ANS. These results are consistent with a model which postulates that alphabeta subunit pairs undergo ligand-mediated transitions between open and closed conformations during the catalytic cycle. Consistent with the kinetic data showing that binding of alpha-site ligands increases the affinity of the beta site for L-Ser and that formation of E(A-A) activates the alpha reaction [Brzović, P. S., Ngo, K., & Dunn, M. F. (1992) Biochemistry 31, 3831-3839], while mutations in alpha subunit loops 2 and 6 prevent the ligand- mediated transition to a closed structure [Brzović, P.S., Hyde, C.C., Miles, E.W., & Dunn, M.F. (1993) Biochemistry 32, 10404-10413], we conclude that reciprocal ligand-mediated allosteric interactions between the heterologous subunits promote conformational transitions between open and closed structures in alphabeta subunit pairs which function to coordinate catalytic activities and facilitate the channeling of indole between the two catalytic sites.
Similar articles
-
Allosteric regulation of tryptophan synthase channeling: the internal aldimine probed by trans-3-indole-3'-acrylate binding.Biochemistry. 2007 Jul 3;46(26):7728-39. doi: 10.1021/bi700386b. Epub 2007 Jun 9. Biochemistry. 2007. PMID: 17559231
-
Allosteric regulation of substrate channeling in tryptophan synthase: modulation of the L-serine reaction in stage I of the beta-reaction by alpha-site ligands.Biochemistry. 2007 Jul 3;46(26):7740-53. doi: 10.1021/bi7003872. Epub 2007 Jun 9. Biochemistry. 2007. PMID: 17559232
-
Crystal structures of a mutant (betaK87T) tryptophan synthase alpha2beta2 complex with ligands bound to the active sites of the alpha- and beta-subunits reveal ligand-induced conformational changes.Biochemistry. 1997 Jun 24;36(25):7664-80. doi: 10.1021/bi9700429. Biochemistry. 1997. PMID: 9201907
-
Tryptophan synthase: the workings of a channeling nanomachine.Trends Biochem Sci. 2008 Jun;33(6):254-64. doi: 10.1016/j.tibs.2008.04.008. Epub 2008 May 15. Trends Biochem Sci. 2008. PMID: 18486479 Review.
-
Tryptophan synthase: a multienzyme complex with an intramolecular tunnel.Chem Rec. 2001;1(2):140-51. doi: 10.1002/tcr.4. Chem Rec. 2001. PMID: 11893063 Review.
Cited by
-
Directed Evolution Mimics Allosteric Activation by Stepwise Tuning of the Conformational Ensemble.J Am Chem Soc. 2018 Jun 13;140(23):7256-7266. doi: 10.1021/jacs.8b03490. Epub 2018 May 17. J Am Chem Soc. 2018. PMID: 29712420 Free PMC article.
-
Biosynthesis of unique natural product scaffolds by Fe(II)/αKG-dependent oxygenases.J Nat Med. 2025 Mar;79(2):303-313. doi: 10.1007/s11418-025-01880-z. Epub 2025 Feb 6. J Nat Med. 2025. PMID: 39915427 Free PMC article. Review.
-
Allosteric regulation of substrate channeling and catalysis in the tryptophan synthase bienzyme complex.Arch Biochem Biophys. 2012 Mar 15;519(2):154-66. doi: 10.1016/j.abb.2012.01.016. Epub 2012 Feb 2. Arch Biochem Biophys. 2012. PMID: 22310642 Free PMC article. Review.
-
Towards Photochromic Azobenzene-Based Inhibitors for Tryptophan Synthase.Chemistry. 2021 Feb 1;27(7):2439-2451. doi: 10.1002/chem.202004061. Epub 2020 Dec 22. Chemistry. 2021. PMID: 33078454 Free PMC article.
-
Altering Active-Site Loop Dynamics Enhances Standalone Activity of the Tryptophan Synthase Alpha Subunit.ACS Catal. 2024 Nov 2;14(22):16986-16995. doi: 10.1021/acscatal.4c04587. eCollection 2024 Nov 15. ACS Catal. 2024. PMID: 39569152 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources