Predictive docking of protein-protein and protein-DNA complexes
- PMID: 9631301
- DOI: 10.1016/s0959-440x(98)80047-x
Predictive docking of protein-protein and protein-DNA complexes
Abstract
Recent developments in algorithms to predict the docking of two proteins have considered both the initial rigid-body global search and subsequent screening and refinement. The result of two blind trials of protein docking are encouraging--for complexes that are not too large and do not undergo sizeable conformational change upon association, the algorithms are now able to suggest reasonably accurate models.
Similar articles
-
A protein-protein docking benchmark.Proteins. 2003 Jul 1;52(1):88-91. doi: 10.1002/prot.10390. Proteins. 2003. PMID: 12784372
-
Assessment of blind predictions of protein-protein interactions: current status of docking methods.Proteins. 2003 Jul 1;52(1):51-67. doi: 10.1002/prot.10393. Proteins. 2003. PMID: 12784368
-
VRDD: applying virtual reality visualization to protein docking and design.J Mol Graph Model. 1999 Jun-Aug;17(3-4):180-6, 217. doi: 10.1016/s1093-3263(99)00029-7. J Mol Graph Model. 1999. PMID: 10736775
-
Protein-protein recognition.Prog Biophys Mol Biol. 1995;64(2-3):145-66. doi: 10.1016/s0079-6107(96)00001-6. Prog Biophys Mol Biol. 1995. PMID: 8987382 Review. No abstract available.
-
Macromolecular recognition.Curr Opin Struct Biol. 2005 Apr;15(2):171-5. doi: 10.1016/j.sbi.2005.01.018. Curr Opin Struct Biol. 2005. PMID: 15837175 Review.
Cited by
-
An SVM-based method for assessment of transcription factor-DNA complex models.BMC Bioinformatics. 2018 Dec 21;19(Suppl 20):506. doi: 10.1186/s12859-018-2538-y. BMC Bioinformatics. 2018. PMID: 30577740 Free PMC article.
-
Integrative Protein Assembly With LZerD and Deep Learning in CAPRI 47-55.Proteins. 2025 Mar 17:10.1002/prot.26818. doi: 10.1002/prot.26818. Online ahead of print. Proteins. 2025. PMID: 40095385
-
Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions.Protein Sci. 2005 Feb;14(2):316-28. doi: 10.1110/ps.04941505. Protein Sci. 2005. PMID: 15659366 Free PMC article.
-
Protein-Protein Docking Using EMAP in CHARMM and Support Vector Machine: Application to Ab/Ag Complexes.J Chem Theory Comput. 2013 Sep 10;9(9):4186-94. doi: 10.1021/ct400508s. Epub 2013 Aug 16. J Chem Theory Comput. 2013. PMID: 26592408 Free PMC article.
-
Modeling helix-turn-helix protein-induced DNA bending with knowledge-based distance restraints.Biophys J. 1999 Sep;77(3):1191-205. doi: 10.1016/S0006-3495(99)76971-7. Biophys J. 1999. PMID: 10465734 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources