JPred: a consensus secondary structure prediction server

Abstract

An interactive protein secondary structure prediction Internet server is presented. The server allows a single sequence or multiple alignment to be submitted, and returns predictions from six secondary structure prediction algorithms that exploit evolutionary information from multiple sequences. A consensus prediction is also returned which improves the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies the use of current prediction algorithms and allows conservation patterns important to structure and function to be identified.

Availability: http://barton.ebi.ac.uk/servers/jpred.h tml

Contact: geoff@ebi.ac.uk