Liu JS - Search Results

1

Modeling within-motif dependence for transcription factor binding site predictions.

Zhou Q, Liu JS. Zhou Q, et al. Among authors: liu js. Bioinformatics. 2004 Apr 12;20(6):909-16. doi: 10.1093/bioinformatics/bth006. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751969

2

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.

Qin ZS, McCue LA, Thompson W, Mayerhofer L, Lawrence CE, Liu JS. Qin ZS, et al. Among authors: liu js. Nat Biotechnol. 2003 Apr;21(4):435-9. doi: 10.1038/nbt802. Epub 2003 Mar 10. Nat Biotechnol. 2003. PMID: 12627170

3

BioOptimizer: a Bayesian scoring function approach to motif discovery.

Jensen ST, Liu JS. Jensen ST, et al. Among authors: liu js. Bioinformatics. 2004 Jul 10;20(10):1557-64. doi: 10.1093/bioinformatics/bth127. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962923

4

BEST: binding-site estimation suite of tools.

Che D, Jensen S, Cai L, Liu JS. Che D, et al. Among authors: liu js. Bioinformatics. 2005 Jun 15;21(12):2909-11. doi: 10.1093/bioinformatics/bti425. Epub 2005 Apr 6. Bioinformatics. 2005. PMID: 15814553

5

A boosting approach for motif modeling using ChIP-chip data.

Hong P, Liu XS, Zhou Q, Lu X, Liu JS, Wong WH. Hong P, et al. Among authors: liu js, liu xs. Bioinformatics. 2005 Jun 1;21(11):2636-43. doi: 10.1093/bioinformatics/bti402. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817698

6

Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.

Jensen ST, Shen L, Liu JS. Jensen ST, et al. Among authors: liu js. Bioinformatics. 2005 Oct 15;21(20):3832-9. doi: 10.1093/bioinformatics/bti628. Epub 2005 Aug 16. Bioinformatics. 2005. PMID: 16105899

7

RSIR: regularized sliced inverse regression for motif discovery.

Zhong W, Zeng P, Ma P, Liu JS, Zhu Y. Zhong W, et al. Among authors: liu js. Bioinformatics. 2005 Nov 15;21(22):4169-75. doi: 10.1093/bioinformatics/bti680. Epub 2005 Sep 15. Bioinformatics. 2005. PMID: 16166098

8

Predicting gene expression from sequence: a reexamination.

Yuan Y, Guo L, Shen L, Liu JS. Yuan Y, et al. Among authors: liu js. PLoS Comput Biol. 2007 Nov;3(11):e243. doi: 10.1371/journal.pcbi.0030243. PLoS Comput Biol. 2007. PMID: 18052544 Free PMC article.

9

Extracting sequence features to predict protein-DNA interactions: a comparative study.

Zhou Q, Liu JS. Zhou Q, et al. Among authors: liu js. Nucleic Acids Res. 2008 Jul;36(12):4137-48. doi: 10.1093/nar/gkn361. Epub 2008 Jun 13. Nucleic Acids Res. 2008. PMID: 18556756 Free PMC article.

10

Bayesian inference of protein-protein interactions from biological literature.

Chowdhary R, Zhang J, Liu JS. Chowdhary R, et al. Among authors: liu js. Bioinformatics. 2009 Jun 15;25(12):1536-42. doi: 10.1093/bioinformatics/btp245. Epub 2009 Apr 15. Bioinformatics. 2009. PMID: 19369495 Free PMC article.

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