Chen D - Search Results

1

Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization.

Ambrus A, Chen D, Dai J, Jones RA, Yang D. Ambrus A, et al. Among authors: chen d. Biochemistry. 2005 Feb 15;44(6):2048-58. doi: 10.1021/bi048242p. Biochemistry. 2005. PMID: 15697230

2

Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry protocol for monitoring the progress of enzymatic (13)C/(15)N-labeled DNA syntheses.

Ambrus A, Chen D, Whatcott C, Somogyi A, Yang D. Ambrus A, et al. Among authors: chen d. Anal Biochem. 2005 Jul 15;342(2):246-53. doi: 10.1016/j.ab.2005.04.008. Anal Biochem. 2005. PMID: 15989927

3

An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution.

Dai J, Dexheimer TS, Chen D, Carver M, Ambrus A, Jones RA, Yang D. Dai J, et al. Among authors: chen d. J Am Chem Soc. 2006 Feb 1;128(4):1096-8. doi: 10.1021/ja055636a. J Am Chem Soc. 2006. PMID: 16433524 Free PMC article.

4

Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution.

Ambrus A, Chen D, Dai J, Bialis T, Jones RA, Yang D. Ambrus A, et al. Among authors: chen d. Nucleic Acids Res. 2006 May 19;34(9):2723-35. doi: 10.1093/nar/gkl348. Print 2006. Nucleic Acids Res. 2006. PMID: 16714449 Free PMC article.

5

NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region.

Dai J, Chen D, Jones RA, Hurley LH, Yang D. Dai J, et al. Among authors: chen d. Nucleic Acids Res. 2006;34(18):5133-44. doi: 10.1093/nar/gkl610. Epub 2006 Sep 22. Nucleic Acids Res. 2006. PMID: 16998187 Free PMC article.

6

Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation.

Dai J, Punchihewa C, Ambrus A, Chen D, Jones RA, Yang D. Dai J, et al. Among authors: chen d. Nucleic Acids Res. 2007;35(7):2440-50. doi: 10.1093/nar/gkm009. Epub 2007 Mar 29. Nucleic Acids Res. 2007. PMID: 17395643 Free PMC article.

7

Yeast gene RAD52 can substitute for phage T4 gene 46 or 47 in carrying out recombination and DNA repair.

Chen DS, Bernstein H. Chen DS, et al. Proc Natl Acad Sci U S A. 1988 Sep;85(18):6821-5. doi: 10.1073/pnas.85.18.6821. Proc Natl Acad Sci U S A. 1988. PMID: 3045825 Free PMC article.

8

Efficient Sampling of Short Protein Trajectories with Conditional Diffusion Models.

Xiong C, Kandhan P, Chen D, Ma Z, Smith ED, Tao P. Xiong C, et al. Among authors: chen d. J Chem Theory Comput. 2026 Jan 2. doi: 10.1021/acs.jctc.5c01579. Online ahead of print. J Chem Theory Comput. 2026. PMID: 41481844

9

Fluorinated lipid nanoparticles enable real-time tracking of mRNA delivery and uncover spatiotemporal mechanisms of immune activation.

Xie K, Zhu L, Duan M, Fu Y, Wang H, Shen Y, Li Y, Wang R, Jiang ZX, Chen S, Suk JS, Chen D, Zhou X. Xie K, et al. Among authors: chen d. Proc Natl Acad Sci U S A. 2026 Jan 6;123(1):e2519823123. doi: 10.1073/pnas.2519823123. Epub 2026 Jan 2. Proc Natl Acad Sci U S A. 2026. PMID: 41481443

10

Machine-learning accelerated density-explicit polymer field theory simulations.

Chen D, Xuan Y, Ceniceros HD, Fredrickson GH. Chen D, et al. J Chem Phys. 2026 Jan 7;164(1):014904. doi: 10.1063/5.0312599. J Chem Phys. 2026. PMID: 41480909

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