Sugnet CW - Search Results

1

Detection and measurement of alternative splicing using splicing-sensitive microarrays.

Srinivasan K, Shiue L, Hayes JD, Centers R, Fitzwater S, Loewen R, Edmondson LR, Bryant J, Smith M, Rommelfanger C, Welch V, Clark TA, Sugnet CW, Howe KJ, Mandel-Gutfreund Y, Ares M Jr. Srinivasan K, et al. Among authors: sugnet cw. Methods. 2005 Dec;37(4):345-59. doi: 10.1016/j.ymeth.2005.09.007. Methods. 2005. PMID: 16314264

2

Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays.

Clark TA, Sugnet CW, Ares M Jr. Clark TA, et al. Among authors: sugnet cw. Science. 2002 May 3;296(5569):907-10. doi: 10.1126/science.1069415. Science. 2002. PMID: 11988574

3

Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M Jr. Sugnet CW, et al. PLoS Comput Biol. 2006 Jan;2(1):e4. doi: 10.1371/journal.pcbi.0020004. Epub 2006 Jan 20. PLoS Comput Biol. 2006. PMID: 16424921 Free PMC article.

4

Transcriptome and genome conservation of alternative splicing events in humans and mice.

Sugnet CW, Kent WJ, Ares M Jr, Haussler D. Sugnet CW, et al. Pac Symp Biocomput. 2004:66-77. doi: 10.1142/9789812704856_0007. Pac Symp Biocomput. 2004. PMID: 14992493 Free article.

5

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y. Gardina PJ, et al. BMC Genomics. 2006 Dec 27;7:325. doi: 10.1186/1471-2164-7-325. BMC Genomics. 2006. PMID: 17192196 Free PMC article.

6

Affy exon tissues: exon levels in normal tissues in human, mouse and rat.

Pohl AA, Sugnet CW, Clark TA, Smith K, Fujita PA, Cline MS. Pohl AA, et al. Among authors: sugnet cw. Bioinformatics. 2009 Sep 15;25(18):2442-3. doi: 10.1093/bioinformatics/btp414. Epub 2009 Jul 1. Bioinformatics. 2009. PMID: 19570805 Free PMC article.

7

Removal of a single alpha-tubulin gene intron suppresses cell cycle arrest phenotypes of splicing factor mutations in Saccharomyces cerevisiae.

Burns CG, Ohi R, Mehta S, O'Toole ET, Winey M, Clark TA, Sugnet CW, Ares M Jr, Gould KL. Burns CG, et al. Among authors: sugnet cw. Mol Cell Biol. 2002 Feb;22(3):801-15. doi: 10.1128/MCB.22.3.801-815.2002. Mol Cell Biol. 2002. PMID: 11784857 Free PMC article.

8

Knowledge-based analysis of microarray gene expression data by using support vector machines.

Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS, Ares M Jr, Haussler D. Brown MP, et al. Among authors: sugnet cw. Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):262-7. doi: 10.1073/pnas.97.1.262. Proc Natl Acad Sci U S A. 2000. PMID: 10618406 Free PMC article.

9

The human genome browser at UCSC.

Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. Kent WJ, et al. Among authors: sugnet cw. Genome Res. 2002 Jun;12(6):996-1006. doi: 10.1101/gr.229102. Genome Res. 2002. PMID: 12045153 Free PMC article.

10

The UCSC Genome Browser Database: update 2006.

Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ. Hinrichs AS, et al. Among authors: sugnet cw. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8. doi: 10.1093/nar/gkj144. Nucleic Acids Res. 2006. PMID: 16381938 Free PMC article.

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