Liu JS - Search Results

1

Predicting gene expression from sequence: a reexamination.

Yuan Y, Guo L, Shen L, Liu JS. Yuan Y, et al. Among authors: liu js. PLoS Comput Biol. 2007 Nov;3(11):e243. doi: 10.1371/journal.pcbi.0030243. PLoS Comput Biol. 2007. PMID: 18052544 Free PMC article.

2

Integrating regulatory motif discovery and genome-wide expression analysis.

Conlon EM, Liu XS, Lieb JD, Liu JS. Conlon EM, et al. Among authors: liu js, liu xs. Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3339-44. doi: 10.1073/pnas.0630591100. Epub 2003 Mar 7. Proc Natl Acad Sci U S A. 2003. PMID: 12626739 Free PMC article.

3

Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites.

Qin ZS, McCue LA, Thompson W, Mayerhofer L, Lawrence CE, Liu JS. Qin ZS, et al. Among authors: liu js. Nat Biotechnol. 2003 Apr;21(4):435-9. doi: 10.1038/nbt802. Epub 2003 Mar 10. Nat Biotechnol. 2003. PMID: 12627170

4

Statistical resynchronization and Bayesian detection of periodically expressed genes.

Lu X, Zhang W, Qin ZS, Kwast KE, Liu JS. Lu X, et al. Among authors: liu js. Nucleic Acids Res. 2004 Jan 22;32(2):447-55. doi: 10.1093/nar/gkh205. Print 2004. Nucleic Acids Res. 2004. PMID: 14739237 Free PMC article.

5

Modeling within-motif dependence for transcription factor binding site predictions.

Zhou Q, Liu JS. Zhou Q, et al. Among authors: liu js. Bioinformatics. 2004 Apr 12;20(6):909-16. doi: 10.1093/bioinformatics/bth006. Epub 2004 Jan 29. Bioinformatics. 2004. PMID: 14751969

6

The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis.

Eichenberger P, Fujita M, Jensen ST, Conlon EM, Rudner DZ, Wang ST, Ferguson C, Haga K, Sato T, Liu JS, Losick R. Eichenberger P, et al. Among authors: liu js. PLoS Biol. 2004 Oct;2(10):e328. doi: 10.1371/journal.pbio.0020328. Epub 2004 Sep 21. PLoS Biol. 2004. PMID: 15383836 Free PMC article.

7

A boosting approach for motif modeling using ChIP-chip data.

Hong P, Liu XS, Zhou Q, Lu X, Liu JS, Wong WH. Hong P, et al. Among authors: liu js, liu xs. Bioinformatics. 2005 Jun 1;21(11):2636-43. doi: 10.1093/bioinformatics/bti402. Epub 2005 Apr 7. Bioinformatics. 2005. PMID: 15817698

8

Combining phylogenetic motif discovery and motif clustering to predict co-regulated genes.

Jensen ST, Shen L, Liu JS. Jensen ST, et al. Among authors: liu js. Bioinformatics. 2005 Oct 15;21(20):3832-9. doi: 10.1093/bioinformatics/bti628. Epub 2005 Aug 16. Bioinformatics. 2005. PMID: 16105899

9

RSIR: regularized sliced inverse regression for motif discovery.

Zhong W, Zeng P, Ma P, Liu JS, Zhu Y. Zhong W, et al. Among authors: liu js. Bioinformatics. 2005 Nov 15;21(22):4169-75. doi: 10.1093/bioinformatics/bti680. Epub 2005 Sep 15. Bioinformatics. 2005. PMID: 16166098

10

Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae.

Yuan GC, Ma P, Zhong W, Liu JS. Yuan GC, et al. Among authors: liu js. Genome Biol. 2006;7(8):R70. doi: 10.1186/gb-2006-7-8-R70. Epub 2006 Aug 2. Genome Biol. 2006. PMID: 16884527 Free PMC article.

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