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Page 1
Connecting single-cell transcriptomes to projectomes in mouse visual cortex.
Sorensen SA, Gouwens NW, Wang Y, Mallory M, Budzillo A, Dalley R, Lee B, Gliko O, Kuo HC, Kuang X, Mann R, Ahmadinia L, Alfiler L, Baftizadeh F, Baker K, Bannick S, Bertagnolli D, Bickley K, Bohn P, Brown D, Bomben J, Brouner K, Chen C, Chen K, Chvilicek M, Collman F, Daigle T, Dawes T, de Frates R, Dee N, DePartee M, Egdorf T, El-Hifnawi L, Enstrom R, Esposito L, Farrell C, Gala R, Glomb A, Gamlin C, Gary A, Goldy J, Gu H, Hadley K, Hawrylycz M, Henry A, Hill D, Hirokawa KE, Huang Z, Johnson K, Juneau Z, Kebede S, Kim L, Lee C, Lesnar P, Li A, Glomb A, Li Y, Liang E, Link K, Maxwell M, McGraw M, McMillen DA, Mukora A, Ng L, Ochoa T, Oldre A, Park D, Pom CA, Popovich Z, Potekhina L, Rajanbabu R, Ransford S, Reding M, Ruiz A, Sandman D, Siverts L, Smith KA, Stoecklin M, Sulc J, Tieu M, Ting J, Trinh J, Vargas S, Vumbaco D, Walker M, Wang M, Wanner A, Waters J, Williams G, Wilson J, Xiong W, Lein E, Berg J, Kalmbach B, Yao S, Gong H, Luo Q, Ng L, Sümbül U, Jarsky T, Yao Z, Tasic B, Zeng H. Sorensen SA, et al. Among authors: collman f. bioRxiv [Preprint]. 2023 Nov 26:2023.11.25.568393. doi: 10.1101/2023.11.25.568393. bioRxiv. 2023. PMID: 38168270 Free PMC article. Preprint.
Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits.
Hunker AC, Wirthlin ME, Gill G, Johansen NJ, Hooper M, Omstead V, Vargas S, Lerma MN, Taskin N, Weed N, Laird WD, Bishaw YM, Bendrick JL, Gore BB, Ben-Simon Y, Opitz-Araya X, Martinez RA, Way SW, Thyagarajan B, Otto S, Sanchez REA, Alexander JR, Amaya A, Amster A, Arbuckle J, Ayala A, Baker PM, Barcelli T, Barta S, Bertagnolli D, Bielstein C, Bishwakarma P, Bowlus J, Boyer G, Brouner K, Casian B, Casper T, Chakka AB, Chakrabarty R, Chong P, Clark M, Colbert K, Daniel S, Dawe T, Departee M, DiValentin P, Donadio NP, Dotson NI, Dwivedi D, Egdorf T, Fliss T, Gary A, Goldy J, Grasso C, Groce EL, Gudsnuk K, Han W, Haradon Z, Hastings S, Helback O, Ho WV, Huang C, Johnson T, Jones DL, Juneau Z, Kenney J, Leibly M, Li S, Liang E, Loeffler H, Lusk NA, Madigan Z, Malloy J, Malone J, McCue R, Melchor J, Mich JK, Moosman S, Morin E, Naidoo R, Newman D, Ngo K, Nguyen K, Oster AL, Ouellette B, Oyama AA, Pena N, Pham T, Phillips E, Pom C, Potekhina L, Ransford S, Ray PL, Reding M, Rette DF, Reynoldson C, Rimorin C, Sigler AR, Rocha DB, Ronellenfitch K, Ruiz A, Sawyer L, Sevigny JP, Shapovalova NV, Shepard N, Shulga L, Soliman S, Staats B, Taormina MJ, Tieu M, Wang Y, Wilkes J, Wood T, Zhou T, W… See abstract for full author list ➔ Hunker AC, et al. Among authors: collman f. Neuron. 2025 May 21;113(10):1507-1524.e17. doi: 10.1016/j.neuron.2025.04.035. Neuron. 2025. PMID: 40403704 Free PMC article.
Foundation model of neural activity predicts response to new stimulus types and anatomy.
Wang EY, Fahey PG, Ding Z, Papadopoulos S, Ponder K, Weis MA, Chang A, Muhammad T, Patel S, Ding Z, Tran D, Fu J, Schneider-Mizell CM, Reid RC, Collman F, da Costa NM, Franke K, Ecker AS, Reimer J, Pitkow X, Sinz FH, Tolias AS. Wang EY, et al. Among authors: collman f. bioRxiv [Preprint]. 2024 Aug 31:2023.03.21.533548. doi: 10.1101/2023.03.21.533548. bioRxiv. 2024. Update in: Nature. 2025 Apr;640(8058):470-477. doi: 10.1038/s41586-025-08829-y. PMID: 36993435 Free PMC article. Updated. Preprint.
Hebb's Vision: The Structural Underpinnings of Hebbian Assemblies.
Wagner-Carena J, Kate S, Riordan T, Abbasi-Asl R, Aman J, Amster A, Bodor AL, Brittain D, Buchanan JA, Buice MA, Bumbarger DJ, Collman F, da Costa NM, Denman DJ, de Vries S, Joyce E, Kapner D, King CW, Larkin JD, Lecoq J, Mahalingam G, Millman D, Mölter J, Morrison C, Reid RC, Schneider-Mizell CM, Daniel S, Suckow S, Takasaki KT, Takeno M, Torres R, Vumbaco D, Waters J, Wyrick DG, Yin W, Zhuang J, Mihalas S, Berteau S. Wagner-Carena J, et al. Among authors: collman f. bioRxiv [Preprint]. 2025 May 23:2025.04.24.649900. doi: 10.1101/2025.04.24.649900. bioRxiv. 2025. PMID: 40661630 Free PMC article. Preprint.
Nanometer-scale views of visual cortex reveal anatomical features of primary cilia poised to detect synaptic spillover.
Ott CM, Torres R, Kuan TS, Kuan A, Buchanan J, Elabbady L, Seshamani S, Bodor AL, Collman F, Bock DD, Lee WC, da Costa NM, Lippincott-Schwartz J. Ott CM, et al. Among authors: collman f. bioRxiv [Preprint]. 2023 Nov 6:2023.10.31.564838. doi: 10.1101/2023.10.31.564838. bioRxiv. 2023. Update in: Curr Biol. 2024 Jun 3;34(11):2418-2433.e4. doi: 10.1016/j.cub.2024.04.043. PMID: 37961618 Free PMC article. Updated. Preprint.
Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits.
Hunker AC, Wirthlin ME, Gill G, Johansen NJ, Hooper M, Omstead V, Vargas S, Lerma MN, Taskin N, Weed N, Laird WD, Bishaw YM, Bendrick JL, Gore BB, Ben-Simon Y, Opitz-Araya X, Martinez RA, Way SW, Thyagarajan B, Otto S, Sanchez REA, Alexander JR, Amaya A, Amster A, Arbuckle J, Ayala A, Baker PM, Barcelli T, Barta S, Bertagnolli D, Bielstein C, Bishwakarma P, Bowlus J, Boyer G, Brouner K, Casian B, Casper T, Chakka AB, Chakrabarty R, Clark M, Colbert K, Daniel S, Dawe T, Departee M, DiValentin P, Donadio NP, Dotson NI, Dwivedi D, Egdorf T, Fliss T, Gary A, Goldy J, Grasso C, Groce EL, Gudsnuk K, Han W, Haradon Z, Hastings S, Helback O, Ho WV, Huang C, Johnson T, Jones DL, Juneau Z, Kenney J, Leibly M, Li S, Liang E, Loeffler H, Lusk NA, Madigan Z, Malloy J, Malone J, McCue R, Melchor J, Mich JK, Moosman S, Morin E, Naidoo R, Newman D, Ngo K, Nguyen K, Oster AL, Ouellette B, Oyama AA, Pena N, Pham T, Phillips E, Pom C, Potekhina L, Ransford S, Reding M, Rette DF, Reynoldson C, Rimorin C, Sigler AR, Rocha DB, Ronellenfitch K, Ruiz A, Sawyer L, Sevigny J, Shapovalova NV, Shepard N, Shulga L, Soliman S, Staats B, Taormina MJ, Tieu M, Wang Y, Wilkes J, Wood T, Zhou T, Williford A, Dee N,… See abstract for full author list ➔ Hunker AC, et al. Among authors: collman f. bioRxiv [Preprint]. 2025 Mar 20:2024.09.27.615553. doi: 10.1101/2024.09.27.615553. bioRxiv. 2025. Update in: Neuron. 2025 May 21;113(10):1507-1524.e17. doi: 10.1016/j.neuron.2025.04.035. PMID: 39386678 Free PMC article. Updated. Preprint.
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types.
Ben-Simon Y, Hooper M, Narayan S, Daigle TL, Dwivedi D, Way SW, Oster A, Stafford DA, Mich JK, Taormina MJ, Martinez RA, Opitz-Araya X, Roth JR, Alexander JR, Allen S, Amster A, Arbuckle J, Ayala A, Baker PM, Bakken TE, Barcelli T, Barta S, Bendrick J, Bertagnolli D, Bielstein C, Bishwakarma P, Bowlus J, Boyer G, Brouner K, Casian B, Casper T, Chakka AB, Chakrabarty R, Chance RK, Chavan S, Clark M, Colbert K, Collman F, Daniel S, Departee M, DiValentin P, Donadio N, Dotson N, Egdorf T, Fliss T, Gabitto M, Garcia J, Gary A, Gasperini M, Gloe J, Goldy J, Gore BB, Graybuck L, Greisman N, Haeseleer F, Halterman C, Haradon Z, Hastings SD, Helback O, Ho W, Hockemeyer D, Huang C, Huff S, Hunker A, Johansen N, Jones D, Juneau Z, Kalmbach B, Kannan M, Khem S, Kussick E, Kutsal R, Larsen R, Lee C, Lee AY, Leibly M, Lenz GH, Li S, Liang E, Lusk N, Madigan Z, Malloy J, Malone J, McCue R, Melchor J, Mollenkopf T, Moosman S, Morin E, Newman D, Ng L, Ngo K, Omstead V, Otto S, Oyama A, Pena N, Pham T, Phillips E, Pom CA, Potekhina L, Ransford S, Ray PL, Rette D, Reynoldson C, Rimorin C, Rocha D, Ruiz A, Sanchez REA, Sawyer L, Sedeno-Cortes A, Sevigny JP, Shapovalova N, Shepard N, Shulga L,… See abstract for full author list ➔ Ben-Simon Y, et al. Among authors: collman f. Cell. 2025 May 29;188(11):3045-3064.e23. doi: 10.1016/j.cell.2025.05.002. Epub 2025 May 21. Cell. 2025. PMID: 40403729 Free article.
56 results