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Page 1
Integrative analysis of the melanoma transcriptome.
Berger MF, Levin JZ, Vijayendran K, Sivachenko A, Adiconis X, Maguire J, Johnson LA, Robinson J, Verhaak RG, Sougnez C, Onofrio RC, Ziaugra L, Cibulskis K, Laine E, Barretina J, Winckler W, Fisher DE, Getz G, Meyerson M, Jaffe DB, Gabriel SB, Lander ES, Dummer R, Gnirke A, Nusbaum C, Garraway LA. Berger MF, et al. Among authors: jaffe db. Genome Res. 2010 Apr;20(4):413-27. doi: 10.1101/gr.103697.109. Epub 2010 Feb 23. Genome Res. 2010. PMID: 20179022 Free PMC article.
Paired-end sequencing of Fosmid libraries by Illumina.
Williams LJ, Tabbaa DG, Li N, Berlin AM, Shea TP, Maccallum I, Lawrence MS, Drier Y, Getz G, Young SK, Jaffe DB, Nusbaum C, Gnirke A. Williams LJ, et al. Among authors: jaffe db. Genome Res. 2012 Nov;22(11):2241-9. doi: 10.1101/gr.138925.112. Epub 2012 Jul 16. Genome Res. 2012. PMID: 22800726 Free PMC article.
Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.
Vinson JP, Jaffe DB, O'Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N, Satou Y, Nusbaum C, Birren B, Galagan JE, Lander ES. Vinson JP, et al. Among authors: jaffe db. Genome Res. 2005 Aug;15(8):1127-35. doi: 10.1101/gr.3722605. Genome Res. 2005. PMID: 16077012 Free PMC article.
Quality scores and SNP detection in sequencing-by-synthesis systems.
Brockman W, Alvarez P, Young S, Garber M, Giannoukos G, Lee WL, Russ C, Lander ES, Nusbaum C, Jaffe DB. Brockman W, et al. Among authors: jaffe db. Genome Res. 2008 May;18(5):763-70. doi: 10.1101/gr.070227.107. Epub 2008 Jan 22. Genome Res. 2008. PMID: 18212088 Free PMC article.
ALLPATHS: de novo assembly of whole-genome shotgun microreads.
Butler J, MacCallum I, Kleber M, Shlyakhter IA, Belmonte MK, Lander ES, Nusbaum C, Jaffe DB. Butler J, et al. Among authors: jaffe db. Genome Res. 2008 May;18(5):810-20. doi: 10.1101/gr.7337908. Epub 2008 Mar 13. Genome Res. 2008. PMID: 18340039 Free PMC article.
ARACHNE: a whole-genome shotgun assembler.
Batzoglou S, Jaffe DB, Stanley K, Butler J, Gnerre S, Mauceli E, Berger B, Mesirov JP, Lander ES. Batzoglou S, et al. Among authors: jaffe db. Genome Res. 2002 Jan;12(1):177-89. doi: 10.1101/gr.208902. Genome Res. 2002. PMID: 11779843 Free PMC article.
96 results