Silva-Rocha R - Search Results

1

Implementing an OR-NOT (ORN) logic gate with components of the SOS regulatory network of Escherichia coli.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Mol Biosyst. 2011 Aug;7(8):2389-96. doi: 10.1039/c1mb05094j. Epub 2011 May 17. Mol Biosyst. 2011. PMID: 21584342

2

Mining logic gates in prokaryotic transcriptional regulation networks.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. FEBS Lett. 2008 Apr 9;582(8):1237-44. doi: 10.1016/j.febslet.2008.01.060. Epub 2008 Feb 12. FEBS Lett. 2008. PMID: 18275855 Free article. Review.

3

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms.

Silva-Rocha R, Tamames J, dos Santos VM, de Lorenzo V. Silva-Rocha R, et al. Environ Microbiol. 2011 Sep;13(9):2389-402. doi: 10.1111/j.1462-2920.2011.02455.x. Epub 2011 Mar 16. Environ Microbiol. 2011. PMID: 21410625 Review.

4

A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Mol Biosyst. 2011 Nov;7(11):2982-90. doi: 10.1039/c1mb05264k. Epub 2011 Aug 18. Mol Biosyst. 2011. PMID: 21853168

5

Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Mol Biosyst. 2012 Jul 6;8(7):1950-7. doi: 10.1039/c2mb25030f. Epub 2012 May 15. Mol Biosyst. 2012. PMID: 22588473

6

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Mol Microbiol. 2012 Oct;86(1):199-211. doi: 10.1111/j.1365-2958.2012.08184.x. Epub 2012 Aug 16. Mol Microbiol. 2012. PMID: 22845424 Free article.

7

The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Environ Microbiol. 2013 Jan;15(1):271-86. doi: 10.1111/1462-2920.12014. Epub 2012 Nov 22. Environ Microbiol. 2013. PMID: 23171249

8

Quantitative, non-disruptive monitoring of transcription in single cells with a broad-host range GFP-luxCDABE dual reporter system.

Benedetti IM, de Lorenzo V, Silva-Rocha R. Benedetti IM, et al. PLoS One. 2012;7(12):e52000. doi: 10.1371/journal.pone.0052000. Epub 2012 Dec 28. PLoS One. 2012. PMID: 23284849 Free PMC article.

9

Noise and robustness in prokaryotic regulatory networks.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Annu Rev Microbiol. 2010;64:257-75. doi: 10.1146/annurev.micro.091208.073229. Annu Rev Microbiol. 2010. PMID: 20825349 Review.

10

Functional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting.

Valls M, Silva-Rocha R, Cases I, Muñoz A, de Lorenzo V. Valls M, et al. Mol Microbiol. 2011 Nov;82(3):591-601. doi: 10.1111/j.1365-2958.2011.07835.x. Epub 2011 Sep 30. Mol Microbiol. 2011. PMID: 21958188 Free article.

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