Plotkin SS - Search Results

1

Unfolded protein ensembles, folding trajectories, and refolding rate prediction.

Das A, Sin BK, Mohazab AR, Plotkin SS. Das A, et al. Among authors: plotkin ss. J Chem Phys. 2013 Sep 28;139(12):121925. doi: 10.1063/1.4817215. J Chem Phys. 2013. PMID: 24089737

2

Buffed energy landscapes: another solution to the kinetic paradoxes of protein folding.

Plotkin SS, Wolynes PG. Plotkin SS, et al. Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4417-22. doi: 10.1073/pnas.0330720100. Epub 2003 Apr 3. Proc Natl Acad Sci U S A. 2003. PMID: 12677002 Free PMC article.

3

Three-body interactions improve the prediction of rate and mechanism in protein folding models.

Ejtehadi MR, Avall SP, Plotkin SS. Ejtehadi MR, et al. Among authors: plotkin ss. Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15088-93. doi: 10.1073/pnas.0403486101. Epub 2004 Oct 6. Proc Natl Acad Sci U S A. 2004. PMID: 15469920 Free PMC article.

4

Protein folding rates correlate with heterogeneity of folding mechanism.

Oztop B, Ejtehadi MR, Plotkin SS. Oztop B, et al. Among authors: plotkin ss. Phys Rev Lett. 2004 Nov 12;93(20):208105. doi: 10.1103/PhysRevLett.93.208105. Epub 2004 Nov 12. Phys Rev Lett. 2004. PMID: 15600977

5

Determination of barrier heights and prefactors from protein folding rate data.

Plotkin SS. Plotkin SS. Biophys J. 2005 Jun;88(6):3762-9. doi: 10.1529/biophysj.104.052548. Epub 2005 Mar 11. Biophys J. 2005. PMID: 15764665 Free PMC article.

6

Minimal folding pathways for coarse-grained biopolymer fragments.

Mohazab AR, Plotkin SS. Mohazab AR, et al. Among authors: plotkin ss. Biophys J. 2008 Dec 15;95(12):5496-507. doi: 10.1529/biophysj.108.135046. Epub 2008 Sep 26. Biophys J. 2008. PMID: 18820236 Free PMC article.

7

A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality.

Morriss-Andrews A, Rottler J, Plotkin SS. Morriss-Andrews A, et al. Among authors: plotkin ss. J Chem Phys. 2010 Jan 21;132(3):035105. doi: 10.1063/1.3269994. J Chem Phys. 2010. PMID: 20095755

8

A theory for the anisotropic and inhomogeneous dielectric properties of proteins.

Guest WC, Cashman NR, Plotkin SS. Guest WC, et al. Among authors: plotkin ss. Phys Chem Chem Phys. 2011 Apr 7;13(13):6286-95. doi: 10.1039/c0cp02061c. Epub 2011 Feb 28. Phys Chem Chem Phys. 2011. PMID: 21359369

9

Mechanical probes of SOD1 predict systematic trends in metal and dimer affinity of ALS-associated mutants.

Das A, Plotkin SS. Das A, et al. Among authors: plotkin ss. J Mol Biol. 2013 Mar 11;425(5):850-74. doi: 10.1016/j.jmb.2012.12.022. Epub 2013 Jan 3. J Mol Biol. 2013. PMID: 23291526

10

Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathways.

Mohazab AR, Plotkin SS. Mohazab AR, et al. Among authors: plotkin ss. PLoS One. 2013;8(1):e53642. doi: 10.1371/journal.pone.0053642. Epub 2013 Jan 24. PLoS One. 2013. PMID: 23365638 Free PMC article.

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