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Page 1
The genomic substrate for adaptive radiation in African cichlid fish.
Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alföldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleton KL, Conte MA, D'Cotta H, Eshel O, Gaffney L, Galibert F, Gante HF, Gnerre S, Greuter L, Guyon R, Haddad NS, Haerty W, Harris RM, Hofmann HA, Hourlier T, Hulata G, Jaffe DB, Lara M, Lee AP, MacCallum I, Mwaiko S, Nikaido M, Nishihara H, Ozouf-Costaz C, Penman DJ, Przybylski D, Rakotomanga M, Renn SCP, Ribeiro FJ, Ron M, Salzburger W, Sanchez-Pulido L, Santos ME, Searle S, Sharpe T, Swofford R, Tan FJ, Williams L, Young S, Yin S, Okada N, Kocher TD, Miska EA, Lander ES, Venkatesh B, Fernald RD, Meyer A, Ponting CP, Streelman JT, Lindblad-Toh K, Seehausen O, Di Palma F. Brawand D, et al. Among authors: simakov o. Nature. 2014 Sep 18;513(7518):375-381. doi: 10.1038/nature13726. Epub 2014 Sep 3. Nature. 2014. PMID: 25186727 Free PMC article.
The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals.
Schnitzler CE, Chang ES, Waletich J, Quiroga-Artigas G, Wong WY, Nguyen AD, Barreira SN, Doonan LB, Gonzalez P, Koren S, Gahan JM, Sanders SM, Bradshaw B, DuBuc TQ, Febrimarsa, de Jong D, Nawrocki EP, Larson A, Klasfeld S, Gornik SG, Moreland RT, Wolfsberg TG, Phillippy AM, Mullikin JC, Simakov O, Cartwright P, Nicotra M, Frank U, Baxevanis AD. Schnitzler CE, et al. Among authors: simakov o. Genome Res. 2024 Apr 25;34(3):498-513. doi: 10.1101/gr.278382.123. Genome Res. 2024. PMID: 38508693 Free PMC article.
The genome of the colonial hydroid Hydractinia reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals.
Schnitzler CE, Chang ES, Waletich J, Quiroga-Artigas G, Wong WY, Nguyen AD, Barreira SN, Doonan L, Gonzalez P, Koren S, Gahan JM, Sanders SM, Bradshaw B, DuBuc TQ, Febrimarsa, de Jong D, Nawrocki EP, Larson A, Klasfeld S, Gornik SG, Moreland RT, Wolfsberg TG, Phillippy AM, Mullikin JC, Simakov O, Cartwright P, Nicotra M, Frank U, Baxevanis AD. Schnitzler CE, et al. Among authors: simakov o. bioRxiv [Preprint]. 2023 Aug 27:2023.08.25.554815. doi: 10.1101/2023.08.25.554815. bioRxiv. 2023. Update in: Genome Res. 2024 Apr 25;34(3):498-513. doi: 10.1101/gr.278382.123. PMID: 37786714 Free PMC article. Updated. Preprint.
Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology.
Baden T, Briseño J, Coffing G, Cohen-Bodénès S, Courtney A, Dickerson D, Dölen G, Fiorito G, Gestal C, Gustafson T, Heath-Heckman E, Hua Q, Imperadore P, Kimbara R, Król M, Lajbner Z, Lichilín N, Macchi F, McCoy MJ, Nishiguchi MK, Nyholm SV, Otjacques E, Pérez-Ferrer PA, Ponte G, Pungor JR, Rogers TF, Rosenthal JJC, Rouressol L, Rubas N, Sanchez G, Santos CP, Schultz DT, Seuntjens E, Songco-Casey JO, Stewart IE, Styfhals R, Tuanapaya S, Vijayan N, Weissenbacher A, Zifcakova L, Schulz G, Weertman W, Simakov O, Albertin CB. Baden T, et al. Among authors: simakov o. Integr Comp Biol. 2023 Dec 29;63(6):1226-1239. doi: 10.1093/icb/icad087. Integr Comp Biol. 2023. PMID: 37370232 Free PMC article.
A genome resource for the marine annelid Platynereis dumerilii.
Mutemi KN, Simakov O, Pan L, Santangeli L, Null R, Handberg-Thorsager M, Vellutini BC, Peterson KJ, Fromm B, Larsson T, Savage E, Lopez MO, Hercog R, Provaznik J, Ordoñez-Rueda D, Azevedo N, Gazave E, Vervoort M, Tomancak P, Tan W, Winkler S, Benes V, Hui J, Helm C, Özpolat BD, Arendt D. Mutemi KN, et al. Among authors: simakov o. bioRxiv [Preprint]. 2024 Nov 11:2024.06.21.600153. doi: 10.1101/2024.06.21.600153. bioRxiv. 2024. Update in: BMC Genomics. 2025 Jul 14;26(1):665. doi: 10.1186/s12864-025-11727-2. PMID: 38948846 Free PMC article. Updated. Preprint.
Acceleration of genome rearrangement in clitellate annelids.
Schultz DT, Heath-Heckman EAC, Winchell CJ, Kuo DH, Yu YS, Oberauer F, Kocot KM, Cho SJ, Simakov O, Weisblat DA. Schultz DT, et al. Among authors: simakov o. bioRxiv [Preprint]. 2024 May 14:2024.05.12.593736. doi: 10.1101/2024.05.12.593736. bioRxiv. 2024. PMID: 38798472 Free PMC article. Preprint.
A chromosome-scale epigenetic map of the Hydra genome reveals conserved regulators of cell state.
Cazet JF, Siebert S, Little HM, Bertemes P, Primack AS, Ladurner P, Achrainer M, Fredriksen MT, Moreland RT, Singh S, Zhang S, Wolfsberg TG, Schnitzler CE, Baxevanis AD, Simakov O, Hobmayer B, Juliano CE. Cazet JF, et al. Among authors: simakov o. Genome Res. 2023 Feb;33(2):283-298. doi: 10.1101/gr.277040.122. Epub 2023 Jan 13. Genome Res. 2023. PMID: 36639202 Free PMC article.
Ancient animal microRNAs and the evolution of tissue identity.
Christodoulou F, Raible F, Tomer R, Simakov O, Trachana K, Klaus S, Snyman H, Hannon GJ, Bork P, Arendt D. Christodoulou F, et al. Among authors: simakov o. Nature. 2010 Feb 25;463(7284):1084-8. doi: 10.1038/nature08744. Epub 2010 Jan 31. Nature. 2010. PMID: 20118916 Free PMC article.
89 results