Plotkin SS - Search Results

1

Protein Transfer Free Energy Obeys Entropy-Enthalpy Compensation.

Mills EA, Plotkin SS. Mills EA, et al. Among authors: plotkin ss. J Phys Chem B. 2015 Nov 5;119(44):14130-44. doi: 10.1021/acs.jpcb.5b09219. Epub 2015 Oct 26. J Phys Chem B. 2015. PMID: 26423005

2

Protein folding rates correlate with heterogeneity of folding mechanism.

Oztop B, Ejtehadi MR, Plotkin SS. Oztop B, et al. Among authors: plotkin ss. Phys Rev Lett. 2004 Nov 12;93(20):208105. doi: 10.1103/PhysRevLett.93.208105. Epub 2004 Nov 12. Phys Rev Lett. 2004. PMID: 15600977

3

A theory for the anisotropic and inhomogeneous dielectric properties of proteins.

Guest WC, Cashman NR, Plotkin SS. Guest WC, et al. Among authors: plotkin ss. Phys Chem Chem Phys. 2011 Apr 7;13(13):6286-95. doi: 10.1039/c0cp02061c. Epub 2011 Feb 28. Phys Chem Chem Phys. 2011. PMID: 21359369

4

Polymer uncrossing and knotting in protein folding, and their role in minimal folding pathways.

Mohazab AR, Plotkin SS. Mohazab AR, et al. Among authors: plotkin ss. PLoS One. 2013;8(1):e53642. doi: 10.1371/journal.pone.0053642. Epub 2013 Jan 24. PLoS One. 2013. PMID: 23365638 Free PMC article.

5

Density functional theory for protein transfer free energy.

Mills EA, Plotkin SS. Mills EA, et al. Among authors: plotkin ss. J Phys Chem B. 2013 Oct 24;117(42):13278-90. doi: 10.1021/jp403600q. Epub 2013 Aug 14. J Phys Chem B. 2013. PMID: 23944753

6

Unfolded protein ensembles, folding trajectories, and refolding rate prediction.

Das A, Sin BK, Mohazab AR, Plotkin SS. Das A, et al. Among authors: plotkin ss. J Chem Phys. 2013 Sep 28;139(12):121925. doi: 10.1063/1.4817215. J Chem Phys. 2013. PMID: 24089737

7

Prediction of Misfolding-Specific Epitopes in SOD1 Using Collective Coordinates.

Peng X, Cashman NR, Plotkin SS. Peng X, et al. Among authors: plotkin ss. J Phys Chem B. 2018 Dec 13;122(49):11662-11676. doi: 10.1021/acs.jpcb.8b07680. Epub 2018 Nov 5. J Phys Chem B. 2018. PMID: 30351123

8

Ensemble Generation for Linear and Cyclic Peptides Using a Reservoir Replica Exchange Molecular Dynamics Implementation in GROMACS.

Hsueh SCC, Aina A, Plotkin SS. Hsueh SCC, et al. Among authors: plotkin ss. J Phys Chem B. 2022 Dec 15;126(49):10384-10399. doi: 10.1021/acs.jpcb.2c05470. Epub 2022 Nov 21. J Phys Chem B. 2022. PMID: 36410027

9

Understanding protein folding with energy landscape theory. Part II: Quantitative aspects.

Plotkin SS, Onuchic JN. Plotkin SS, et al. Q Rev Biophys. 2002 Aug;35(3):205-86. doi: 10.1017/s0033583502003785. Q Rev Biophys. 2002. PMID: 12599750 Review. No abstract available.

10

Buffed energy landscapes: another solution to the kinetic paradoxes of protein folding.

Plotkin SS, Wolynes PG. Plotkin SS, et al. Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4417-22. doi: 10.1073/pnas.0330720100. Epub 2003 Apr 3. Proc Natl Acad Sci U S A. 2003. PMID: 12677002 Free PMC article.

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