Silva-Rocha R - Search Results

1

Transcription factor levels enable metabolic diversification of single cells of environmental bacteria.

Guantes R, Benedetti I, Silva-Rocha R, de Lorenzo V. Guantes R, et al. ISME J. 2016 May;10(5):1122-33. doi: 10.1038/ismej.2015.193. Epub 2015 Dec 4. ISME J. 2016. PMID: 26636554 Free PMC article.

2

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms.

Silva-Rocha R, Tamames J, dos Santos VM, de Lorenzo V. Silva-Rocha R, et al. Environ Microbiol. 2011 Sep;13(9):2389-402. doi: 10.1111/j.1462-2920.2011.02455.x. Epub 2011 Mar 16. Environ Microbiol. 2011. PMID: 21410625 Review.

3

A composite feed-forward loop I4-FFL involving IHF and Crc stabilizes expression of the XylR regulator of Pseudomonas putida mt-2 from growth phase perturbations.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Mol Biosyst. 2011 Nov;7(11):2982-90. doi: 10.1039/c1mb05264k. Epub 2011 Aug 18. Mol Biosyst. 2011. PMID: 21853168

4

A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. PLoS One. 2012;7(4):e34675. doi: 10.1371/journal.pone.0034675. Epub 2012 Apr 6. PLoS One. 2012. PMID: 22493710 Free PMC article.

5

Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Mol Biosyst. 2012 Jul 6;8(7):1950-7. doi: 10.1039/c2mb25030f. Epub 2012 May 15. Mol Biosyst. 2012. PMID: 22588473

6

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Mol Microbiol. 2012 Oct;86(1):199-211. doi: 10.1111/j.1365-2958.2012.08184.x. Epub 2012 Aug 16. Mol Microbiol. 2012. PMID: 22845424 Free article.

7

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2.

Silva-Rocha R, Pérez-Pantoja D, de Lorenzo V. Silva-Rocha R, et al. ISME J. 2013 Feb;7(2):229-32. doi: 10.1038/ismej.2012.98. Epub 2012 Aug 16. ISME J. 2013. PMID: 22895160 Free PMC article. No abstract available.

8

The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. Environ Microbiol. 2013 Jan;15(1):271-86. doi: 10.1111/1462-2920.12014. Epub 2012 Nov 22. Environ Microbiol. 2013. PMID: 23171249

9

Quantitative, non-disruptive monitoring of transcription in single cells with a broad-host range GFP-luxCDABE dual reporter system.

Benedetti IM, de Lorenzo V, Silva-Rocha R. Benedetti IM, et al. PLoS One. 2012;7(12):e52000. doi: 10.1371/journal.pone.0052000. Epub 2012 Dec 28. PLoS One. 2012. PMID: 23284849 Free PMC article.

10

Engineering multicellular logic in bacteria with metabolic wires.

Silva-Rocha R, de Lorenzo V. Silva-Rocha R, et al. ACS Synth Biol. 2014 Apr 18;3(4):204-9. doi: 10.1021/sb400064y. Epub 2013 Jul 22. ACS Synth Biol. 2014. PMID: 23863114 Free article.

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