MacCarthy T - Search Results

1

Potential for evolution of complex defense strategies in a multi-scale model of virus-host coevolution.

Shin J, MacCarthy T. Shin J, et al. Among authors: maccarthy t. BMC Evol Biol. 2016 Oct 26;16(1):233. doi: 10.1186/s12862-016-0804-z. BMC Evol Biol. 2016. PMID: 27784264 Free PMC article.

2

The limits of subfunctionalization.

MacCarthy T, Bergman A. MacCarthy T, et al. BMC Evol Biol. 2007 Nov 7;7:213. doi: 10.1186/1471-2148-7-213. BMC Evol Biol. 2007. PMID: 17988397 Free PMC article.

3

Antagonistic Coevolution Drives Whack-a-Mole Sensitivity in Gene Regulatory Networks.

Shin J, MacCarthy T. Shin J, et al. Among authors: maccarthy t. PLoS Comput Biol. 2015 Oct 9;11(10):e1004432. doi: 10.1371/journal.pcbi.1004432. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26451700 Free PMC article.

4

The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes.

Chen J, MacCarthy T. Chen J, et al. Among authors: maccarthy t. PLoS Comput Biol. 2017 Mar 31;13(3):e1005471. doi: 10.1371/journal.pcbi.1005471. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28362825 Free PMC article.

5

The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure.

Shapiro M, Meier S, MacCarthy T. Shapiro M, et al. Among authors: maccarthy t. BMC Bioinformatics. 2018 May 2;19(1):163. doi: 10.1186/s12859-018-2161-y. BMC Bioinformatics. 2018. PMID: 29716522 Free PMC article.

6

A-to-I editing of Malacoherpesviridae RNAs supports the antiviral role of ADAR1 in mollusks.

Rosani U, Bai CM, Maso L, Shapiro M, Abbadi M, Domeneghetti S, Wang CM, Cendron L, MacCarthy T, Venier P. Rosani U, et al. Among authors: maccarthy t. BMC Evol Biol. 2019 Jul 23;19(1):149. doi: 10.1186/s12862-019-1472-6. BMC Evol Biol. 2019. PMID: 31337330 Free PMC article.

7

Mutational pressure by host APOBEC3s more strongly affects genes expressed early in the lytic phase of herpes simplex virus-1 (HSV-1) and human polyomavirus (HPyV) infection.

Shapiro M, Krug LT, MacCarthy T. Shapiro M, et al. Among authors: maccarthy t. PLoS Pathog. 2021 Apr 30;17(4):e1009560. doi: 10.1371/journal.ppat.1009560. eCollection 2021 Apr. PLoS Pathog. 2021. PMID: 33930088 Free PMC article.

8

Using large-scale perturbations in gene network reconstruction.

MacCarthy T, Pomiankowski A, Seymour R. MacCarthy T, et al. BMC Bioinformatics. 2005 Jan 19;6:11. doi: 10.1186/1471-2105-6-11. BMC Bioinformatics. 2005. PMID: 15659246 Free PMC article.

9

Differential regulation drives plasticity in sex determination gene networks.

MacCarthy T, Seymour RM, Pomiankowski A. MacCarthy T, et al. BMC Evol Biol. 2010 Dec 16;10:388. doi: 10.1186/1471-2148-10-388. BMC Evol Biol. 2010. PMID: 21162741 Free PMC article.

10

The underlying molecular and network level mechanisms in the evolution of robustness in gene regulatory networks.

Pujato M, MacCarthy T, Fiser A, Bergman A. Pujato M, et al. Among authors: maccarthy t. PLoS Comput Biol. 2013;9(1):e1002865. doi: 10.1371/journal.pcbi.1002865. Epub 2013 Jan 3. PLoS Comput Biol. 2013. PMID: 23300434 Free PMC article.

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